LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g02051	ATGGATTCTCAAGCGGGTTTATCTTTAGGGTTGAATGCTTCCATGCAATCATCACCTGCTGGTTCATCAACTGCTTCACATAGTGATAATTCTTTTGCTCTTGATTTGaattataaatcaaattcaaattcaaaatcaaatgttTCACATAGTCTTGCATGGTGTTTAACTCCTGAAAAACAACCAGAGAATAATGTTGTTGTAGTTGTTAAGAAACGTGAacatgaggaagatgaagatggGGTtgttgatggtgaagaagaaggTGAAACTATTAATTTTATGGGTAGGACTGTTTGTGTGAAGAGGAAGATAGAGGAGTGTCTACAAAGTTTTCCGGTGAAACGTGTTGCGGTGGCGGATTCGAAGTTGTCTGTGAGTTGGGGGAATCAGCCATTGAGTGTTGCTGATCCTGAAATTCATGGAATTATGCAGAAGGAGAAGTTGAGACAGTTTAAAGGGATTGAATTGATTGCTTCTGAGAATTTTGTGTGCAGGGCTGTGATGGAAGCACTTGGTAGTCATTTGACTAACAAGTATTCGGAGGGGATGCCGGGTGCTAAATACTATACTGGTAATCAGTACATTGATCAGCTTGAGTTTCTTTGTTGTGAACGCGCGTTGAATGCTTTTGATCTTGATTCGAATAATTGGGGTGTTAATGTTCAACCTTATTCATGTACTTCTGCTAATTTTGCTGTTTATACTGGTCTTTTGAATCCTGGTGATAGGATTATGGGTTTGGATACGGCTTCTGGTGGACATCCGAGTCATGGTTATTATACTCATGGTGGGAAGAAGGTTTCTGCTGCTTCTATTTTCTTTGAGACTTTGTCTTATAAGGTGAATCCTTTGACTGGTTACATTGATTATGATAAGCTTGAGGAGAAAGTGGTGGATTATAGACCTAAGATACTTATCTGTGGTGGTAGTTCTTATCCTAGAGAATGGGATTATATGAGGTTTAGGAAGATTGCTGATAAATGTGGAGCTATTTTGATGTGTGACATGGCTCATATTAGTGGTCTTGTTGCAGCTAAGGAAGTTGCTAGTCCATTTGAATACTGTGATATTGTTACCTCAACAACCCACAAAAGTCTTAGAGGTCCAAGAGGAGGTATCATCTTTTACAGAAGAGGGCCAAAACCAAGGAGGCAAGGCTTTGTTCTTAATCACGGAGACGATAGTACTTATGATTTTGAGGACAAGATAAACTTTGCTTTATATCCATCATTGCAAGGAGGTCCCCACAATAATCACATTGCTGCTCTTGCTATAGCTTTGAAACAAGTTGCAACTCCAGAGTATAAAGCATACATGCAGCAGGTGAAGAGAAATGCACAGGCATTAGCAATTGCATTGTTGAGACGAAAATGCAGATTGGTAACTGATGGGACTGACAATCATCTTTTGCTCTGGGACATAGCTGCACTTGGCTTAATTGACAGAAACTATGAGAAGGTCTGCGAGGCATGTCACATCACTCTCAATAAGTGTACCATTTATGGTTCTATTTTTTCTGGAGGAGTGAGAATTGGCACTCCAGCAATGACATCAAGGGGCTGTGTAGAGGACGATTTTGAGGCCATAGCTGATTTTCTTTTGAGGGCAGCTCAGATTACCAGCATTATACAGAGGGAACATGGTAAATCATGCAAAGATTTTATCAAGGGTCTTGAGAATAATAAAGATATTTTTGACCTCAGAAATCGGGTCGAGGCATTTGGTTCCCAGTTTGAAATGCCAGGATTCACTTATTGA	1761	0.3844	MDSQAGLSLGLNASMQSSPAGSSTASHSDNSFALDLNYKSNSNSKSNVSHSLAWCLTPEKQPENNVVVVVKKREHEEDEDGVVDGEEEGETINFMGRTVCVKRKIEECLQSFPVKRVAVADSKLSVSWGNQPLSVADPEIHGIMQKEKLRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQYIDQLEFLCCERALNAFDLDSNNWGVNVQPYSCTSANFAVYTGLLNPGDRIMGLDTASGGHPSHGYYTHGGKKVSAASIFFETLSYKVNPLTGYIDYDKLEEKVVDYRPKILICGGSSYPREWDYMRFRKIADKCGAILMCDMAHISGLVAAKEVASPFEYCDIVTSTTHKSLRGPRGGIIFYRRGPKPRRQGFVLNHGDDSTYDFEDKINFALYPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKRNAQALAIALLRRKCRLVTDGTDNHLLLWDIAALGLIDRNYEKVCEACHITLNKCTIYGSIFSGGVRIGTPAMTSRGCVEDDFEAIADFLLRAAQITSIIQREHGKSCKDFIKGLENNKDIFDLRNRVEAFGSQFEMPGFTY	586

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g02051	586	PANTHER	SERINE HYDROXYMETHYLTRANSFERASE	105	584	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999
	Tsu03g02051	586	PANTHER	SERINE HYDROXYMETHYLTRANSFERASE 7	105	584	-	-
	Tsu03g02051	586	SUPERFAMILY	PLP-dependent transferases	128	584	IPR015424	-
	Tsu03g02051	586	ProSitePatterns	Serine hydroxymethyltransferase pyridoxal-phosphate attachment site.	357	373	IPR019798	GO:0030170
	Tsu03g02051	586	Gene3D	-	162	441	IPR015421	GO:0003824
	Tsu03g02051	586	Hamap	Serine hydroxymethyltransferase [glyA].	132	583	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999
	Tsu03g02051	586	MobiDBLite	consensus disorder prediction	1	28	-	-
	Tsu03g02051	586	Gene3D	Aspartate Aminotransferase, domain 1	137	582	IPR015422	GO:0003824
	Tsu03g02051	586	CDD	SHMT	137	575	IPR001085	GO:0004372\|GO:0019264\|GO:0030170\|GO:0035999
	Tsu03g02051	586	Pfam	Serine hydroxymethyltransferase	134	533	IPR039429	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g02051	Tsu-Chr3	21582367	21588312	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g02051	K00600		-	gmx:100776419	870.152

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu03g02051	03	21582367	21588312	Tsu03g02051	03	21582367	21588312	ECH