Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02047 ATGGCCGCTTCTCTCTGGAAACAATCATCTCTATTGGGTTGTTGttcatgttcttcttcttctccattcTCTTCTAAATCTCAACAACCACCCAAATTCGTACGTTTTCCATCTCGTCCCTTTCACGCCTCAAACACTATCTTAGGGTTTCCAACCCCCTTTACCTCTACCTCTATCAATCCAACTCCACTCTTTGCTTCAACTACAAATAATGAAAGAGAGGCGACTCAGAATGGTGAAGATCAAGAACCTTTACCTAGCTTAGTGGTCCTTATTGAAGCATACAAGAAAGCATTTGTTAATGGAAATGAAAAGACTGCATCACAGATTGAAGAAAGAATACAATCATTggcaaataaaaagaataaattgaTTCAGAAACTATCTAGTCTGTCGGCAGATAAAGTTTCTGGGAAGGAGCAATATCTTCGCTTGCAAGCGGATTTTGATAACTTTAGGAAAAGAtgtgagaaagaaaaaattagcaTCCAATCGGATGCCCAACAAGAATTTACTAAGAAACTTCTGTTGATGGTGGACAGTTTCGAGAGAGTCAAACAACAGATTGAAACTGCAAcggagaaagagaagaagattgaTGCCAGCTATCAAAGTATTTACAAGCAATTTGTTGAGACTTTGAGGAGCCATCATGTTTCTGTGGTACCAACTGTGGGCAAGCCTTTTAATCCCTTGCTACATGAAGCCGTTGCACGTGAGGAGTCTGAAGTGTTCAAAGAAGGGATTATAATTAAAGAAACCCGACGAGGTTTCATGCTGAAAGATAAGGTTGTAAGGCCAGCACGTGTGAAGGTTTCCTTAGGTCCTGGGAATAAGAAATCTCCAGCGGCGCCTGCCAAGCCCTTGGAGCAGCCTTCAACAGCTGCTAGAATTGATGAAAGATAA 906 0.3764 MAASLWKQSSLLGCCSCSSSSPFSSKSQQPPKFVRFPSRPFHASNTILGFPTPFTSTSINPTPLFASTTNNEREATQNGEDQEPLPSLVVLIEAYKKAFVNGNEKTASQIEERIQSLANKKNKLIQKLSSLSADKVSGKEQYLRLQADFDNFRKRCEKEKISIQSDAQQEFTKKLLLMVDSFERVKQQIETATEKEKKIDASYQSIYKQFVETLRSHHVSVVPTVGKPFNPLLHEAVAREESEVFKEGIIIKETRRGFMLKDKVVRPARVKVSLGPGNKKSPAAPAKPLEQPSTAARIDER 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02047 301 Coils Coil 100 134 - -
Tsu03g02047 301 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 123 217 IPR013805 -
Tsu03g02047 301 PRINTS GrpE protein signature 143 159 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu03g02047 301 PRINTS GrpE protein signature 171 186 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu03g02047 301 PRINTS GrpE protein signature 226 241 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu03g02047 301 PRINTS GrpE protein signature 253 272 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu03g02047 301 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 220 274 IPR009012 GO:0006457
Tsu03g02047 301 Pfam GrpE 111 273 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu03g02047 301 Hamap Protein GrpE [grpE]. 71 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu03g02047 301 Gene3D - 101 215 IPR013805 -
Tsu03g02047 301 PANTHER GRPE PROTEIN HOMOLOG 1 288 - -
Tsu03g02047 301 CDD GrpE 139 272 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu03g02047 301 ProSitePatterns grpE protein signature. 229 272 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Tsu03g02047 301 MobiDBLite consensus disorder prediction 271 301 - -
Tsu03g02047 301 Gene3D Head domain of nucleotide exchange factor GrpE 219 273 IPR009012 GO:0006457
Tsu03g02047 301 PANTHER GRPE PROTEIN 1 288 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02047 Tsu-Chr3 21467351 21470125 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02047 K03687 - gmx:100809893 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02047 03 21467351 21470125 Tsu03g02047 03 21467351 21470125 ECH