Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02037 ATGACGAAGTTGTTTGCCCGTGTATTTGCTTCACTTCCAGAAGATGTAAAACTAGATGACCAACTTTCAGAGAAGATGTCTTTGATTCAACAGTTTATTCGACCAGAAAATTTGGACATCAAGCCAGCATTTCAGAACGAAACATCATGGTTGCTTGCACAGAAAGAATTACAAAAGATTAACATGTACAAGGCACCCAGAGACAAACTTATTTGTATCCTAAGCTGTTGCAAGGTTATTGGCAACTTGCTGCTTAATGCTTCTCTTGCTTCCCAAGATAATCCTCCCGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTTACGTTAAAGGCAAATCCTCCACAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGACGGCAATCTCGTTTGGTTGGGGAAGCATcatattattttacaaatatgCTTTCTGCTGAAGCCTTCATCTCAAACATTGATGCAAAAGCCATTTCGATGGATGAAACTGAGTTTGAGAGAAACATGGAATTTGCCCGTGCTCTTCTTGCAGGGGTTTCAGTTGATACACAAGAACCCAATTCACCTTATCAAAATCATGGACAGCATCCAAgagaagacaaaaataaaacttcgaATGACAATAAGGACCCTGCATTACGAGCTTCGTCATCCGCTGCAAAATTAGAAAGTAAGAAAGTGTCTTTTGCGGATGAGTTATCGATCACAAAAGTTCCATCCCTCTCAGATTTGGAGAATAAAGGGGCAAGTATGATAATAAAAGAGGATAAACTGAATGATGTTTTCAGGGAGTTTCCATATTTATTTGCTAGTGTAGGTGATCTAACAGTAGGTGATGTCGAAGACCTGCTAAATAATTACAAACAATTAGTTTTCAAGTATGTGTCTCTTTCCAAAGGGTTAGGTGTCTCTTCAACATCTCACCTTCCATCGAATCCTCAAAATAATGCTCAGCAGGACAATGCTGAAGCCCTTTCCAAAGGGTTAGGCGTCTTGGCTTCATCTCATCTTCCATCCAATCCTCAAAATAATGCTCAGAACCATGACGAAACCACAATAGATTATTCAGACGGAGGACCTGTAGCTTCCAATGACAAACCAGAAAAATCTACGGACACATCAGATGATAACTCAGATCCTGGAGAGAAAAAAAGTGATTCTGGTTTGCTACAGGATGAGGCAGTTGCATCAGAGGGTGTTGCTCCCTCTTAA 1215 0.3901 MTKLFARVFASLPEDVKLDDQLSEKMSLIQQFIRPENLDIKPAFQNETSWLLAQKELQKINMYKAPRDKLICILSCCKVIGNLLLNASLASQDNPPGADEFLPVLIYVTLKANPPQLHSNLLYIQRFRRQSRLVGEASYYFTNMLSAEAFISNIDAKAISMDETEFERNMEFARALLAGVSVDTQEPNSPYQNHGQHPREDKNKTSNDNKDPALRASSSAAKLESKKVSFADELSITKVPSLSDLENKGASMIIKEDKLNDVFREFPYLFASVGDLTVGDVEDLLNNYKQLVFKYVSLSKGLGVSSTSHLPSNPQNNAQQDNAEALSKGLGVLASSHLPSNPQNNAQNHDETTIDYSDGGPVASNDKPEKSTDTSDDNSDPGEKKSDSGLLQDEAVASEGVAPS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02037 404 MobiDBLite consensus disorder prediction 334 354 - -
Tsu03g02037 404 SMART vps9_2 49 168 IPR003123 -
Tsu03g02037 404 ProSiteProfiles VPS9 domain profile. 16 160 IPR003123 -
Tsu03g02037 404 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 325 IPR045046 GO:0005085|GO:0016192
Tsu03g02037 404 MobiDBLite consensus disorder prediction 184 220 - -
Tsu03g02037 404 Pfam Vacuolar sorting protein 9 (VPS9) domain 52 155 IPR003123 -
Tsu03g02037 404 Gene3D VPS9 domain 13 178 IPR037191 -
Tsu03g02037 404 PANTHER BNAC09G47180D PROTEIN 1 325 - -
Tsu03g02037 404 MobiDBLite consensus disorder prediction 369 390 - -
Tsu03g02037 404 MobiDBLite consensus disorder prediction 334 404 - -
Tsu03g02037 404 MobiDBLite consensus disorder prediction 195 209 - -
Tsu03g02037 404 SUPERFAMILY VPS9 domain 1 171 IPR037191 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02037 Tsu-Chr3 21195778 21199567 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02037 K20131 - gmx:100810958 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02037 03 21195778 21199567 Tsu03g02037 03 21195778 21199567 ECH