Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02017 ATGCATCCTTTCTGCTGCGTCTCCGCTATTTCCGACCAAGCTTCACCGGTCAAACCTTCACCGTCTCTGTTCGCTGACTTCTCTATgcctcctccaccaccaccgcCTGCTGTTGCTGTTAGATCCGATTCGGCTACGATTCATACTCACAGCCATAGTACTGGTAGTCAGCGGGAGTTGCCGTTGCCGGCGGTGGTTGTTGATGTGAAGATCAACGACCTCGTCGGAAATGGAATCTCTGGTATACTTTATAAATGGGTGAATTACGGTAAAGGATGGAGACCTCGATGGTTTGTTCTTCAAGATGGTGTTCTCTCTTACTACAAGATTCATGGACCTGATAAAATCATTGTTAACCACGAAACTGAAAAAGGTTCCAAAGTAATCGGTGATGAATCTATTCGAAGGATCAATCGTAATCGTAAATCTTATCCCAATCAACACCGTCGAAAGCCTTTTGGTGAAATCCATCTCAAGGTTTCAACGATTAGGGAGAGTAAATCAGATGATAAGCGATTTTCAGTGTTTACTGGAATGAAGAGACTTCACTTGAGAGCAGAGTCTCGTGAAGATCGTGTGGCGTGGGTGGAAGCTTTGCAAGCAGTGAAAGATATGTTTCCTCGAATTTCCAACAGTGAATTGATGGCTCCGGTGGACAACGTAACAATTTCAACTGATAAACTGCGAAATCGGCTTATGGAAGAAGGAGTGAGTGAATCAGCTATTCAAGATAGTGAACAAATTATGAAAACTGAGTTTGCAGCACTACAGAATCAATTAGTGTTGCTTAAGCAGAAACACTCCATTCTAATTGATACGTTACGCCACTTAGAGACAGACAAGGTTGATCTCGAGAATACAGTAGTTGATGAGAGCCAAAGACAGTGGAATGATCAAGAAGATTGCTATGGATTAACGCAAGAAAAATTTAGTGAAGGTAGTGCAAGTGAATCTGAGGATGATAATGAGAGAAATGATGCTGCAGAAGAAGAAACAGATGAGGATGACAATGTCTTTTTCGATACCCGTGATATTCTATCATCAAGTTCTTTTAAAAGTAATGGGTCTGATTATAGAGTATCATCCTTTTCTTCTGATAATGATGCATTTGAATCAGAGGAAGATGTAGATCCTTCAAATAGATATATTGGAACCAACCACCCTTTTGTTAAGCGGCGAAAGAAATTGCCAGACCCTgtagagaaagagaaaggtgTCAGTCTTTGGTCAATGATCAAGGATAATATAGGAAAAGATCTAACAAAAGTTTGCCTTCCTGTTTACTTTAATGAGCCTCTCTCTTCCCTGCAAAAGTGTTTTGAAGAAATGGAGTATTCACATCTGCTGGACCAAGCATATGAATGGGGAAAAAGGGGTGATAGCCTCATGAGGATTCTCTATGTCGCTGCTTTTGCTGTATCTGCCTATGCTTCAACCGAAGGAAGAATTTGCAAACCATTTAATCCATTACTTGGGGAAACATATGAAGCTCATTATCCAGATAAAGGCCTTCGTTTTTTTTCAGAAAAGGTCAGCCATCACCCTATGATAGTTGCATGTCACTGTGAGGGTACAGGTTGGAAATTTTCGGGGGATAGCAACTTAAAAAGCAAATTTTGGGGCCGATCAATTCAGCTTGACCCTGTTGGTACTTTGACTTTGGAATTTGATGATGGGGAGGTTTTCCAGTGGAGCAAGGTTACGACATCAATATACAATCTCATATTGGGAAAGCTTTACTGTGATCACTATGGTACAATGCGTATAGAGGGAAATCAAGAGTACTCTTGCAAGCTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCATCAGGTCCATGGTATAGTCCAAGATAGAAACGGAAAAACAGTATCAACCTTGTTTGGAAAATGGGATGAAAGCATGCACTATGTTAATGGAGACTACACTGGGAAGGGGAAAGGTCACGAATCTTTGTCAGAGGCCCATCTACTCTGGAAGCGAAGCAAGCCTCCGATCTTTCCCACTAGATATAACTTCACTCGCTTTGCCATCACGTTAAATGAACTTACCCCTGGATTGAAGGAGAAATTGCCGCCTACAGATTCCAGGTTAAGACCAGACCAACGATATTTAGAAAATGGGGAGTATGAGATGGCAAACTCAGAAAAGTTACGGCTAGAGCAGCGGCAACGACAGGCCCGGAAGATGCAAGAAAGCGGCTGGAAACCACGATGGTTTGCTAAGGATAAAGCAAGTGGGACATACCGCTATATGGGGGGCTATTGGGAGGCTCGAGACAAACGAAAATGGGATTCATGTCCTGACATCTTTGGCCAAATTCCTCCAGATCATATATCTGACGAAATCCAGATTACATCCTAA 2370 0.411 MHPFCCVSAISDQASPVKPSPSLFADFSMPPPPPPPAVAVRSDSATIHTHSHSTGSQRELPLPAVVVDVKINDLVGNGISGILYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVNHETEKGSKVIGDESIRRINRNRKSYPNQHRRKPFGEIHLKVSTIRESKSDDKRFSVFTGMKRLHLRAESREDRVAWVEALQAVKDMFPRISNSELMAPVDNVTISTDKLRNRLMEEGVSESAIQDSEQIMKTEFAALQNQLVLLKQKHSILIDTLRHLETDKVDLENTVVDESQRQWNDQEDCYGLTQEKFSEGSASESEDDNERNDAAEEETDEDDNVFFDTRDILSSSSFKSNGSDYRVSSFSSDNDAFESEEDVDPSNRYIGTNHPFVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEEMEYSHLLDQAYEWGKRGDSLMRILYVAAFAVSAYASTEGRICKPFNPLLGETYEAHYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFSGDSNLKSKFWGRSIQLDPVGTLTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIEGNQEYSCKLKFKEQSIIDRNPHQVHGIVQDRNGKTVSTLFGKWDESMHYVNGDYTGKGKGHESLSEAHLLWKRSKPPIFPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQRQARKMQESGWKPRWFAKDKASGTYRYMGGYWEARDKRKWDSCPDIFGQIPPDHISDEIQITS 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02017 789 Coils Coil 274 294 - -
Tsu03g02017 789 Gene3D - 77 206 IPR011993 -
Tsu03g02017 789 Gene3D - 704 768 - -
Tsu03g02017 789 Pfam Pleckstrin homology domain 84 200 - -
Tsu03g02017 789 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 780 IPR000648 GO:0008289
Tsu03g02017 789 MobiDBLite consensus disorder prediction 309 339 - -
Tsu03g02017 789 Pfam Oxysterol-binding protein 407 761 IPR000648 GO:0008289
Tsu03g02017 789 ProSiteProfiles PH domain profile. 76 204 IPR001849 -
Tsu03g02017 789 Coils Coil 712 732 - -
Tsu03g02017 789 MobiDBLite consensus disorder prediction 352 384 - -
Tsu03g02017 789 MobiDBLite consensus disorder prediction 322 338 - -
Tsu03g02017 789 SUPERFAMILY Oxysterol-binding protein-like 402 785 IPR037239 -
Tsu03g02017 789 MobiDBLite consensus disorder prediction 352 367 - -
Tsu03g02017 789 Gene3D - 493 668 - -
Tsu03g02017 789 CDD PH_ORP_plant 79 211 - -
Tsu03g02017 789 SMART PH_update 77 206 IPR001849 -
Tsu03g02017 789 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 2 780 - -
Tsu03g02017 789 SUPERFAMILY PH domain-like 79 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02017 Tsu-Chr3 20893648 20900098 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02017 K20456 - gmx:100137077 1383.24