Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02010 ATGGATTTAAACCAAATCCAATTAGCTTTGCGTTGTTGCATTCGCTTTCGATCAATTAAAAATGCCAAATCACTCCATTCTTACATAATTAAATCCGGTCATTTTAATCAACTTTTTCTCTTAAACAACATGATCTCTGTTTATGCAAAGTGTTCCAGTTTCAATGATGCACGTAACCTTTTCGACGAAATGCCTCATAGGAACATAGTTTCTTGGACAACAATGGTCTCTGCATTCACCAATTCTGGCATGCCCAATGAAGCTCTAAAGCTCTACAACGAGATGCTGGAATCCAAAACTGAACAACCTAATCAGTTTTTGTATTCTGCGGTTCTCAAAGCGTGTGGTCTCGCGGGAAATGTTAAATTGGGCAAGTTGGTTCATGACCATATATTTCAAACTAAGTTAGATGTTGATATTGTTTTGATGAATGCCCTTTTGGATATGTACGTCAAATGTGGGAGCTTGATGGATGCTCAACGAGTTTTCTATGAAATCCCGTGTAAAAATGCTACTTCATGGAACACCCTTAttttgggtcatgctaaacaagGCTTGATTGGTGATGCGATGAAACTGTTCGATAAAACGCCGGAACCGGATATTGTATCTTGGAACAGCATCATTGCTGGCCTTGTAGATAATGCTAGTGCCCATGCGTTGCAATTTGTTTCTATGATGCATGTGAAGGGTCTTAAGCTGGATGAATTCACATTCCCGAATGCCCTCAAAGCTTGCGGTTTGTGTGATGAGTTAATGTTAGGGAGAGAGATTCATTGTTATATTGTTAAGTCGGGTTTTGAGTCTAGCTGTTATTGTATATCAGCGTTGATTGATATGTATTCGAATTGCAAGCTATTGGGTGAAGCAATGAAGATTTTTGATCAATTCTCGAGGAACTCCGCTGTTTCTGAAAGCTTGGCGCTTTGGAATTCTATGCTTTCTGGGTCTGTTGCGAATGGAGATTATGTTGAGGCTCTCAGTATGATTGCTCATATGCATCATTCTGGTGtacattttgatttttatacCTTTAGTACTGCTTTAAAGATCTGCATCTACTTCCAAAACTCGAGTTTGGAATCTCAAGTGCACGGATTGGTCATCACTAGTGGCTATGAGTTAGATTGTGTTATTGGGAGCATTCTTATTGATTTATATGCAAAACAGGGCAATATTAACAATGCATTAAGATTATTTGAGAGGTTACCAGATAAAGATGTTGTGGCTTGGTCTAGTTTGATTGCTGGTTGTGCTAGATTTGGTTCAGATAAGCTagctttttctcttttcatgGATATGATTCATTTGGATCTTCAGATTGACCATTTTGTTATTTCAATTGTTCTAAAAGCTTGTTCAAGTTTGGCATCTCATCAACGTGGCAAGCAAGTTCATGCTTTATGTCTTAAGAAGGGGTATGAAGCAGAGAGAGTAATTACAACTGCTCTAATTGATATGTATGCAAAATGTGGTGATATCCAGGATGCCTTAGCTTTGTTTGATTGTCTTTCAGAAATCGATACCATGAGTTGGACAAGTATTATTATGGGATGTGCGCAAAATGGAAGAGCAGATGAGGCCATTAGTCTTCTGCATAAGATGATAGAATCTGATACAAAGCCAAACAAAGTCACCATTCTAGGTGTTCTTACTGCTTGTAGGCATGCTGGCCTAGTTGAAGAGGCGTGGGCTGTGTTTAATTCTATTGAAACAAAATACGGATTGATACCATGCCTAGCACACTACAATTGTATGGTTGATATACTTGGTCAAGCAGGGCGTTTTGAAGAAGCAGGAAAATTGATTAGTGAAATGCCATTTAAGCCGGAGAAAACTATATGGTCTTCCTTGCTTGGTGCCTGTGGAATTTACAAGAACCGACATCTGGCAAATATTGTTGCCGAGCATCTCCTTGCTACCTCGCCAGAAGATGTTTCTGTATACATAAGGCTGTCAAATGTTTATGCAGCTCTTGGAATGTGGGACAGTTTAAGCAAAGTCAGAGAAGCTGTCAAAAAAGTAGGGAAAAAAGGAGCTGGAAAAAGCTGGATTGAGATCTCAAGTTGA 2070 0.3816 MDLNQIQLALRCCIRFRSIKNAKSLHSYIIKSGHFNQLFLLNNMISVYAKCSSFNDARNLFDEMPHRNIVSWTTMVSAFTNSGMPNEALKLYNEMLESKTEQPNQFLYSAVLKACGLAGNVKLGKLVHDHIFQTKLDVDIVLMNALLDMYVKCGSLMDAQRVFYEIPCKNATSWNTLILGHAKQGLIGDAMKLFDKTPEPDIVSWNSIIAGLVDNASAHALQFVSMMHVKGLKLDEFTFPNALKACGLCDELMLGREIHCYIVKSGFESSCYCISALIDMYSNCKLLGEAMKIFDQFSRNSAVSESLALWNSMLSGSVANGDYVEALSMIAHMHHSGVHFDFYTFSTALKICIYFQNSSLESQVHGLVITSGYELDCVIGSILIDLYAKQGNINNALRLFERLPDKDVVAWSSLIAGCARFGSDKLAFSLFMDMIHLDLQIDHFVISIVLKACSSLASHQRGKQVHALCLKKGYEAERVITTALIDMYAKCGDIQDALALFDCLSEIDTMSWTSIIMGCAQNGRADEAISLLHKMIESDTKPNKVTILGVLTACRHAGLVEEAWAVFNSIETKYGLIPCLAHYNCMVDILGQAGRFEEAGKLISEMPFKPEKTIWSSLLGACGIYKNRHLANIVAEHLLATSPEDVSVYIRLSNVYAALGMWDSLSKVREAVKKVGKKGAGKSWIEISS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02010 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Tsu03g02010 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Tsu03g02010 689 Gene3D Tetratricopeptide repeat domain 2 122 IPR011990 GO:0005515
Tsu03g02010 689 Gene3D Tetratricopeptide repeat domain 364 465 IPR011990 GO:0005515
Tsu03g02010 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 84 684 - -
Tsu03g02010 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 39 83 - -
Tsu03g02010 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Tsu03g02010 689 Gene3D Tetratricopeptide repeat domain 123 215 IPR011990 GO:0005515
Tsu03g02010 689 TIGRFAM PPR: pentatricopeptide repeat domain 42 70 IPR002885 -
Tsu03g02010 689 TIGRFAM PPR: pentatricopeptide repeat domain 70 101 IPR002885 -
Tsu03g02010 689 TIGRFAM PPR: pentatricopeptide repeat domain 511 543 IPR002885 -
Tsu03g02010 689 TIGRFAM PPR: pentatricopeptide repeat domain 583 606 IPR002885 -
Tsu03g02010 689 TIGRFAM PPR: pentatricopeptide repeat domain 309 340 IPR002885 -
Tsu03g02010 689 Gene3D Tetratricopeptide repeat domain 216 363 IPR011990 GO:0005515
Tsu03g02010 689 Gene3D Tetratricopeptide repeat domain 485 689 IPR011990 GO:0005515
Tsu03g02010 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Tsu03g02010 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Tsu03g02010 689 Pfam PPR repeat 409 436 IPR002885 -
Tsu03g02010 689 Pfam PPR repeat 482 504 IPR002885 -
Tsu03g02010 689 Pfam PPR repeat 511 538 IPR002885 -
Tsu03g02010 689 Pfam PPR repeat 173 196 IPR002885 -
Tsu03g02010 689 Pfam PPR repeat 582 606 IPR002885 -
Tsu03g02010 689 Pfam PPR repeat 275 297 IPR002885 -
Tsu03g02010 689 Pfam PPR repeat 310 338 IPR002885 -
Tsu03g02010 689 Pfam PPR repeat 381 407 IPR002885 -
Tsu03g02010 689 Pfam PPR repeat 142 167 IPR002885 -
Tsu03g02010 689 PANTHER BNAC03G28070D PROTEIN 84 684 - -
Tsu03g02010 689 PANTHER BNAC03G28070D PROTEIN 39 83 - -
Tsu03g02010 689 Pfam E motif 625 686 IPR046848 -
Tsu03g02010 689 Pfam PPR repeat family 67 115 IPR002885 -
Tsu03g02010 689 SUPERFAMILY TPR-like 85 664 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02010 Tsu-Chr3 20844098 20846214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02010 1 687 Glycoside Hydrolase AT3G49170 29.513 3.73e-111 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02010 - - mtr:MTR_3g072900 1180.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02010 03 20844098 20846214 Tsu03g02010 03 20844098 20846214 ECH