Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01978 ATggaaacaacaataacaacaacaacaacaactcagAAGAGTCAATCAAAGCTAACAAGAACACAATCATCTCTTCTCAATCTCACTTCTTCACCAACAATTCGATCATCGTTTCAAAGCCTAACTTCAATCAACGATTACTACGACGAAGAAGACGAcaaaaacaacaagaaaaaaatcaagaaaccCCAAAACCGAACCGGGTCAACCCGAATAACAACTCCGGTTATCGCTGTTATTTCATTCGGTTTCCTCGGCGCGTGTTCGTTTTTCTTCTACTTCTCCTTCCTCGGGAGTGACGAGGTACCTACCTCAGAGAATCTATTACTCGCTTTGATTTTCATCGCCGTTGCGCTTTACTTCGCTTCGAAGAATAAAGGCTTAATCAACCACGGAATTTCGGTTTTCAAGCAGTGGTGGGAAATAAACGTGAAACGGGTCGGGTTCGGGTTATCAAAATCATCAGAATCAAAACCGGTTCAGTGGTTCATCGGTGATTCAACAAAAACAtgtacaacaacaacaacgaaGAAAAAGAGTGTTAGGGAAGGTGTTGAGTTTTACAGTAATGGTGATTTTTATGAAGGTGAGTTTCATAAAGGAAGAAGTAATGGGAGTGGTGTTTACAATTACTTTGTGAATGGAAGATATGAAGGTGATTGGATTGATGGAAGATATGATGGTTATGGAATTGAGAGTTGGGCTAGAGGGAGTCGTTATAAAGGTCAATATAGAAAAGGAATGAGACATGGTTATGGTGTTTATAGATTCTATACTGGTGATTCTTTTTCTGGTGAATGGTGTAATGGTCAAAGTCATGGTATGGGTCTTCAAACTTGTTCTGATGCTAGCACTTATGTTGGTCAGTTTAAGCTTGGTGTTAAACATGGTCTTGGTTGTTACCATTTTAGAAATGGAGATAGATATGCAGGGGAGTATTTTGGAGACAAAATTCATGGATTTGGAGTCTACCATTTTGCTAATGGACATTGTTATGAAGGAGCATGGCACGAGGGACGTAGACAAGGTATTGGCTCATATACTTTTCGAAATGGTGATCGAAGATGTGGCGAATGGGATGCTGGTAACCTCAAGCATTCTTTGCCACCACAAACTGATGTTGTCCATCGAGCGATTCAGGCTGCTAGAAAAACGGCTGAGAATGCGATAAACCTTAAACGGGTCGAAGACCAAGTTAACAATGCAGTGATCGCTGCAAACAAGGCCGCCACAGCTGCTAGAGTTGCTGCTGTGAAGGCTGTTCAGAACAGAATGGATGgaaaattttgtgaaactttTGTCTAA 1305 0.3831 METTITTTTTTQKSQSKLTRTQSSLLNLTSSPTIRSSFQSLTSINDYYDEEDDKNNKKKIKKPQNRTGSTRITTPVIAVISFGFLGACSFFFYFSFLGSDEVPTSENLLLALIFIAVALYFASKNKGLINHGISVFKQWWEINVKRVGFGLSKSSESKPVQWFIGDSTKTCTTTTTKKKSVREGVEFYSNGDFYEGEFHKGRSNGSGVYNYFVNGRYEGDWIDGRYDGYGIESWARGSRYKGQYRKGMRHGYGVYRFYTGDSFSGEWCNGQSHGMGLQTCSDASTYVGQFKLGVKHGLGCYHFRNGDRYAGEYFGDKIHGFGVYHFANGHCYEGAWHEGRRQGIGSYTFRNGDRRCGEWDAGNLKHSLPPQTDVVHRAIQAARKTAENAINLKRVEDQVNNAVIAANKAATAARVAAVKAVQNRMDGKFCETFV 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01978 434 SMART morn 238 259 IPR003409 -
Tsu03g01978 434 SMART morn 330 351 IPR003409 -
Tsu03g01978 434 SMART morn 215 236 IPR003409 -
Tsu03g01978 434 SMART morn 192 214 IPR003409 -
Tsu03g01978 434 SMART morn 307 328 IPR003409 -
Tsu03g01978 434 SMART morn 261 282 IPR003409 -
Tsu03g01978 434 SMART morn 284 305 IPR003409 -
Tsu03g01978 434 PANTHER HISTONE H3 K4-SPECIFIC METHYLTRANSFERASE SET7/9 FAMILY PROTEIN 29 427 - -
Tsu03g01978 434 Pfam MORN repeat 263 282 IPR003409 -
Tsu03g01978 434 Pfam MORN repeat 286 308 IPR003409 -
Tsu03g01978 434 Pfam MORN repeat 332 354 IPR003409 -
Tsu03g01978 434 Pfam MORN repeat 240 261 IPR003409 -
Tsu03g01978 434 Pfam MORN repeat 217 239 IPR003409 -
Tsu03g01978 434 Pfam MORN repeat 309 330 IPR003409 -
Tsu03g01978 434 Pfam MORN repeat 194 211 IPR003409 -
Tsu03g01978 434 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 282 362 - -
Tsu03g01978 434 Gene3D - 224 268 - -
Tsu03g01978 434 Gene3D - 176 223 - -
Tsu03g01978 434 Gene3D - 315 380 - -
Tsu03g01978 434 Gene3D - 269 314 - -
Tsu03g01978 434 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 29 427 - -
Tsu03g01978 434 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 188 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01978 Tsu-Chr3 20551991 20554226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01978 189 368 Acyl Lipid Metabolism Gene Families AT1G21980 35.000 3.17e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01978 - - jre:108988356 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01978 03 20551991 20554226 Tsu03g01978 03 20551991 20554226 ECH