Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01916 atgtcatcatcatcatcttctcaaACTCTCAAAATTGGCATAGTTGGGTTTGGAACCTTTGGCCAATTTCTTGCAAACACAATGATGAAACAAGGACATACACTATATGCAACTTCTAGAACTGATTATTCTCAACTCTGTCTCCAACTGGGTATCCATTTCTTCAgGGATATCACAGCATTCCTTGATGCTGACATGGATGTTATACTGCTATGTACATCTATTTCATCATTATCAGATGTTGTTGGATCAATGCCATTAAATTGTCTGAAACGACCAACACTTTTTGTTGATGTTCTTTCAGTTAAAGAGCATCCAAAGAATCTTCTTTTAAGAGTGCTGCCTGAGGAATCAGACATACTTTGCACACATCCAATGTTTGGACCAGTGAGTGGGAAAAATGGATGGCAAAATCTGACTTTCATGTTTGATAAAGTTCGAATTAAGGATCAAGTTACATGCTCTaaatttcttcatatttttgaaagtGAGGGTTGCAAGATGGTAGAAATGTCATGTGAGGAACATGACAAAGCAGCTGCAAAGAGTCAATTTATCACACACACAATAGGAAGGTATGGAGATTCCTACATATCTTTCTAA 603 0.3466 MSSSSSSQTLKIGIVGFGTFGQFLANTMMKQGHTLYATSRTDYSQLCLQLGIHFFRDITAFLDADMDVILLCTSISSLSDVVGSMPLNCLKRPTLFVDVLSVKEHPKNLLLRVLPEESDILCTHPMFGPVSGKNGWQNLTFMFDKVRIKDQVTCSKFLHIFESEGCKMVEMSCEEHDKAAAKSQFITHTIGRYGDSYISF 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01916 200 PANTHER AROGENATE DEHYDROGENASE 1, CHLOROPLASTIC-LIKE 2 192 - -
Tsu03g01916 200 Gene3D - 1 177 - -
Tsu03g01916 200 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 171 IPR036291 -
Tsu03g01916 200 Pfam Prephenate dehydrogenase, nucleotide-binding domain 31 134 IPR046826 -
Tsu03g01916 200 ProSiteProfiles Prephenate/arogenate dehydrogenase domain profile. 10 200 IPR003099 GO:0004665|GO:0006571|GO:0008977
Tsu03g01916 200 PANTHER AROGENATE DEHYDROGENASE-RELATED 2 192 IPR045011 GO:0006571|GO:0033730
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01916 Tsu-Chr3 19882708 19885491 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01916 K15227 - gmx:100787362 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01916 03 19882708 19885491 Tsu03g01916 03 19882708 19885491 ECH