Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01915 ATGGATTCCACTGCTGCTATTCGATCCTTTCACTATCCCATAGGCACTATATCCCATGTGCGATCCTCGATTGTTAAGGCATCTGTAGTTCCCTGTCAGAAAGTCAGATGGAACTCTAATAATGGGCTTCTTCAGCATTTGGCAAATGGCGAGAAGCACATCCACTCTCACACCAGGGGGAAGAAGACACTGGTTTCATGTGCAAAAACAGTTGAAGCTATCAACGCAACCAAGTCTGATGCTTCTTCGGACAGTGCTCCGCAAAACTCATTAGACAAAAAGCCATTGCAAACTGCTACTTTTCCTAATGGATTTGAGGCTTTGGTATTAGAGGTCTGTGACGAGACTGAAATTGCTGAACTGAAATTAAAGGTTGGTGAATTTGAGATGCATCTTAAGCGAAACATTGGAGCAAACACTGGAGCATCAAAAGTTCCGTTGTCTAACATTTCACCAACTACACCACCACCTATTCCAAGTAAACCAATCTACGAATCAGCACCGGATACCCCAGAGCCATTGCCACCATCATCTCCAGAAAAAACCAACCCATTTGCAAATGTTTCGTCACAAAAGTCATCAAAGTTGACAGCATTGGAGGCTTCTGGTACCAATACATATGTGTTAATAAAATCTCCTACGGTCGGTTTATTCCGAAGAGGTAGAACAGTGAAAGGGAAGAGGCTTCCTCCTATCTGTAAAGAGGGTGATGTAATCAAAGAAGGGCAAGTGATAGGGTATCTGGATCAGTTTGCCACTGGACTTCCCGTTAAGTCAGATGTAGCTGGAGAAGTGTTAAAGCTACTCGTTGAGGATGGAGAATCTGTTGGTTATGGAGATCCTCTTATTGCTGTCTTGCCATCTTTCCATGACATTAAAGGGCAGATTGAGTCATGTTTTAAGGTTGAATCACTAGGAAGTAGAGCTGGGATTGGTAATGAGAACAGGGTCAAGATATATGCAGCTGAACAGTCTACAGTGAACAGTACACTGGAGAGAATCCGTGCTCATTGCTCTGTTCATGACAAAGCCTCATTGAAGGGGAAAATGAAGCCCAATACTCAGGCTTTCGCCACTGGACCGCCGCACGTGACTTGTTTTCACCGCGCAACTGTCTCACGTGCCGCGTTTTCTGAGACTCATCTTCCTACACCGAACCAAAAACTCCAACAATTCCGGACCGCCAAACGCCGCCGTGTTAACCTCTCCCTCCACCGCTCCAGTCGCATAATTGCGGCTGTAAACGATGATGACGTGACAGAAACCTCAGTTGAACGCGCTGAGTCTAAAGAATGGTCTCGAGCACGAAGCAACCGGCGAGGCGTTCTGATGGCGCCGTTTCTAGTAGCGGGAGCTTCGTTTCTTCTATCTGCGGCGACGACGAAGGCGGCGGAGGAGGAGAAGGAGAAGGTGACGCCGGTGGAAGTGACGGTTGTGAAACCGGAGGAGGTGAagaagattgaagaggaagtGATAACTTCGAGGATTTACGATGCGACGGCGATAGGTGAACCGTTGGCGATAGGGAAGGAGAAAGGGAAAGTGTGGGAGAAGATGATGAATGCTAGAGTTGTTTATTTGGGAGAAGCTGAACAAGTTCCGGTTCGAGATGATAAGGAATTGGAGCTTGAGATTGTGAAGAATTTGCATAAGCGTTGTGTTGAGATTGATAAGCGTTTATCTTTGGCTATTGAAGCTTTTCCCTCTGATCTTCAAGAACCACTCAATCAATATATGGATAAAAaGATAAATGGAGAAACCTTAAAGACTTATACAGTGCATTGGCCGCCTGAACGATGGCAGGAGTATGAACCTATTCTTAGTTACTGTCGTGAAAATGGAATTCGTCTTATTGCTTGCGGTACTCCACTGAAGATCTTAAGGACTGTCCAAGCAGAAGGAATTAGTGGGCTAACAAAGGCTGAACGTAAATTATATACACCTCCAGCTGGTTCAGGCTTCATATCAGGCTTTAATTCTATGTCACGTAGATCTTCAGTTGATAGTACTCCAAATTTGTCGTTTCCTTTCGGTCCAAGCTCATATCTATCTGCACAGGCTAGAGTAGTTGACGAGTATACTATGTCCCAGATTATCTTACACAATATGTCTGATGGAGGGGCAACTGGTATGTTGATAGTTGTGACCGGTGCTAGCCATGTCACATATGGATCTAGAGGAACCGGAGTGCCCGCAAGAATTTCGagaaaattacaaaagaaaaatcaagtaGTTGTATTACTTGACCCAGAAAGACAGTTCATTCGCCGTGAGGGAGAAGTTCCTGTTGCTGATTTTTTGTGGTATTCTGCTGCCAGACCCTGTAGCAGAAATTGCTTTGACCGGGTTGAGATTGCTCGGGTTATGAATGCTGCTGGTCAGAGGCGAGATGCCCTCCCACAGGATCTTCAAAAGGGAATTGATCTTGGTTTAGTATCACCAGAGGTATTGCAGAACTTCTTTGATCTAGAGAAGTATCCTTTGCTTTCAGAACTCACTCACCGTTTCCAGGGTTTCAGGGAAAGATTGTTGGCCGATCCCAAATTCTTGCATAGACTAGCCATAGAAGAAGGAATATCAGTGACAACTACATTATTAGCACAGTATCAAAAGCGGAAAGAAAACTTCTTTCAAGAGCTTGACTATGTTATTACAGATACTGTCAGAGGATCAGTTGTTGATTTCTTTACAGTGTGGCTTCCTGCACCGACTTTATCATTCCTTTCCTATGCTGATGACATGAATTCGCCTGATAACATTAGTTCTCTATTAGGATTTCTTGGCTCCATCCCAGACAATGCATTTCAAAAGAATCCAGTGGGGACAAATTGGAATCTCAATCATCGAATTGCATCAGTTGTATTTGGTGGTCTAAAACTCGCTGGTGTTGGATTTATTTCAAGTATTGGAGCTGTAGCTTCATCCAATTCACTGTTTGCAGTTCGTAAATTCCTTAATCCAGCAATCGTCGCTAACCAACAGATTGCAAGGTCACCAATACTCAAAACAGCAGTTGTTTATGCATGTTTTCTTGGAATATCAGCAAATCTCCGTTATCAGATAATTGCTGGGGTAGTGGAGCATCGGATTTCTGATCAGTTTGCTTCCCAAACACTTCTTGTAAATATGCTATCTTTTGTATCACGGACAATCAATTCTTACTGGGGAACGCAGCAATGGATTGACCTTGCACTCTCGACTGGATTACAAGTTAGAAAGACCGAGTCACCTGAGTTGCCTACATCAGATTCTCCAAATCAAGCTGTAATCTTATGTAATGAAACAGAAGAAGCCAGTAATAGCATCGATGAGATTAAAAGTGAATGA 3327 0.4334 MDSTAAIRSFHYPIGTISHVRSSIVKASVVPCQKVRWNSNNGLLQHLANGEKHIHSHTRGKKTLVSCAKTVEAINATKSDASSDSAPQNSLDKKPLQTATFPNGFEALVLEVCDETEIAELKLKVGEFEMHLKRNIGANTGASKVPLSNISPTTPPPIPSKPIYESAPDTPEPLPPSSPEKTNPFANVSSQKSSKLTALEASGTNTYVLIKSPTVGLFRRGRTVKGKRLPPICKEGDVIKEGQVIGYLDQFATGLPVKSDVAGEVLKLLVEDGESVGYGDPLIAVLPSFHDIKGQIESCFKVESLGSRAGIGNENRVKIYAAEQSTVNSTLERIRAHCSVHDKASLKGKMKPNTQAFATGPPHVTCFHRATVSRAAFSETHLPTPNQKLQQFRTAKRRRVNLSLHRSSRIIAAVNDDDVTETSVERAESKEWSRARSNRRGVLMAPFLVAGASFLLSAATTKAAEEEKEKVTPVEVTVVKPEEVKKIEEEVITSRIYDATAIGEPLAIGKEKGKVWEKMMNARVVYLGEAEQVPVRDDKELELEIVKNLHKRCVEIDKRLSLAIEAFPSDLQEPLNQYMDKKINGETLKTYTVHWPPERWQEYEPILSYCRENGIRLIACGTPLKILRTVQAEGISGLTKAERKLYTPPAGSGFISGFNSMSRRSSVDSTPNLSFPFGPSSYLSAQARVVDEYTMSQIILHNMSDGGATGMLIVVTGASHVTYGSRGTGVPARISRKLQKKNQVVVLLDPERQFIRREGEVPVADFLWYSAARPCSRNCFDRVEIARVMNAAGQRRDALPQDLQKGIDLGLVSPEVLQNFFDLEKYPLLSELTHRFQGFRERLLADPKFLHRLAIEEGISVTTTLLAQYQKRKENFFQELDYVITDTVRGSVVDFFTVWLPAPTLSFLSYADDMNSPDNISSLLGFLGSIPDNAFQKNPVGTNWNLNHRIASVVFGGLKLAGVGFISSIGAVASSNSLFAVRKFLNPAIVANQQIARSPILKTAVVYACFLGISANLRYQIIAGVVEHRISDQFASQTLLVNMLSFVSRTINSYWGTQQWIDLALSTGLQVRKTESPELPTSDSPNQAVILCNETEEASNSIDEIKSE 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01915 1108 CDD biotinyl_domain 210 285 - -
Tsu03g01915 1108 SUPERFAMILY Single hybrid motif 203 284 IPR011053 -
Tsu03g01915 1108 CDD ChanN-like 523 747 IPR007314 -
Tsu03g01915 1108 Pfam Haem-binding uptake, Tiki superfamily, ChaN 515 734 IPR007314 -
Tsu03g01915 1108 SUPERFAMILY EreA/ChaN-like 514 770 - -
Tsu03g01915 1108 MobiDBLite consensus disorder prediction 150 180 - -
Tsu03g01915 1108 Gene3D - 493 773 - -
Tsu03g01915 1108 MobiDBLite consensus disorder prediction 139 192 - -
Tsu03g01915 1108 PANTHER PROTEIN RETICULATA-RELATED 5, CHLOROPLASTIC 389 1107 - -
Tsu03g01915 1108 PANTHER PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED 389 1107 - -
Tsu03g01915 1108 Pfam Biotin-requiring enzyme 224 283 IPR000089 -
Tsu03g01915 1108 Pfam Protein RETICULATA-related 841 1025 IPR021825 -
Tsu03g01915 1108 Gene3D - 206 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01915 Tsu-Chr3 19867572 19882156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01915 109 287 Acyl Lipid Metabolism Gene Families AT5G15530 22.099 2.79e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01915 - - mtr:MTR_3g071970 1261.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01915 03 19867572 19882156 Tsu03g01915 03 19867572 19882156 ECH