Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01846 ATGAAGATGACAGTGGAGCCAAGTTACTCTCCAAGTCCAACTCCCAAAGAAGAACTCGAATGGTTCCCACTTCCAAAACACCCTCTCTtcgccaccaccaccaccaccacaaccacctCCGGCAACGTTTCCCGAAATCTACTTGCTTTTGACGAAGTTAACAACCGTCTCTATTTCTGGGACTCCAAAAATAACTGCCTCCATCGTCTTTCTCTTCGCCTCGGTGATCCCGATCCTACTTCCGTTCTCGCTGCTTCTCCTTCTAAgGTTTTGCAAACGGATGTTGTGCTGGATTTTGATGTCAATAAAATCTCTATCAATAGGAATGGATCAGCGATACTCCTTTTTGGTTCTCAAAGACTCTGTGTTATGTATCTCTATGGACGCACTTCCAAGAAGGATGTAAATTTGGTTTGTAGGACTATTACTGTTGGTTCTCACACACATTCAATTGGAAACAATGATATTCCGGTATTGGAAGCGTTATGGCACCCTTACAGTGATACTCATTTGGGAATTCTTTCTTCTGACTCAATTTTTAGGCTTTTCAATCTGGCTGTGGATCCTTTGCAACCAGAGCAAGAATATTATTTACAGGCTTCGGGGTCTGGTAGATCCAAAAATGCCTCATCAATGTGTCCTGTCGGATTTTCTTTTGGGGGAGACCACTTGTGGGACAGGTTTAGTGTTTTTGTTGCATTCAGTGATGGGTCTATCTATGTAATTTGCCCTGTTGTTCCATTTGGAAGTCTCTTCATATGCGAATCGTTATTAGAAATATACAACGATGCTCATACATTTGGGCTAATGTCAGCCAACTCTGTAGCGGCTAGTAATTCAAAGTTGGCAATCTCCTGGCTAGAAGCAACGTTTCCTGAGTTACAGAAGCAAGAAATTGAAGGAGACAGCCTTCCTTTGCTCAGATCTCACGCTTATGCTGTATTTGACGCATCTATTGTCTTGCAGGGACCTCTGCGAAGAGTAGGTCAGAGTGGAAATGAAGATTCAGTTGGTCGTAGTGCTGAATGTGAGGGCCGTGCAGTTAGTTTTCTCTACAATTCAGTCAGCAAAGACTCTATCTTGGTGACTGCTTGGAGTGGTGGGCAATTACAGATAGATGCTCTAGCTGATGAGATCCAACCTGTTTGGAGTGTTGGCAGTCCACCCCGTCTTCGTCTTGATTCCCACGACAAAATTCTTGGCCTTGCTATGATTTGTGAGTCAATTGCAAGCAGCCGTCTAGAGAAGCTTGATCATAAAGCCTGGTTGGGTAATCCACCCCCTTTGCTGAGACTGGCTATTGTTGATTTGGCTCTGCCACGAAAAGCAGAAAGCGGTTATAATATTTCATTGTTCATTGATACACTTATGCCAGAGAGAATATATTCCCTCCACGATGGAGGGATCGACTCAATATTGTTGCATTTTCTTCCATTTACAAGTCAGACAAATGGAAAGGATGATACAATGAGAACACCTTCTGTGCATCCTGTTCTAAATACTTGCCAGAGTGGAAGCACTTCAGAGCCTTCACTTTGTGGTTTCGTGTCATTGTCTGATTCATTTGGATATTCCTGGATTGTTGCTGTTACTCTTTCTCAAGAATGTGTTGTGCTTGAGATGAAAACTTGGAACCTCTTGCTTCCGTTAAGCATTGATACGGAGAAGGAACGTTTTCAATCAGCAGGGCAATTAAATGATAGAGAGATACAACCAATAATTAGCAAAGAACTGCTTAGTGGGCCCAAGGAAGTACTTGTACCTTGGGCCTCTCAAAGTTTACGTTCAGTTGCAGCTGATTCAATTGAAGGCCGATCAACATTGCATCAGTATTTCAAGTTATTTCATGAAACTTACGTGGAATATGCACATAAGGTGCATCTGGAACTCAAGCATCATGCACCTCAGTTGAAGAAAATCATTAATGACCAGCATAATCGATTAGGTGAAGCACAGCAGAAACTTTTGAAAGTTGAAGAGAAGGAGTGTATATTACAGAAAAGAGTTGATCGTGCAATTCAAATGCACAGTTCTTTGGAAGAACGCTTACAACGATTAAGGAAATTACCTGGTGCTCACAAAAAACCACTATCCAGATCAGAGCGACAGTTTAAGTCTGAACTTGATAACTTCAAGGAAGTTGAGTTGGATGCCTTGCATTCTTCTGTTGAGGCGGTAAGTGCAAGGATGAGAAGGCACATGCAAGCTTCAAAAGCTAgtcaacaacaaaagaaaataccaGGGAAGAAAATTAGTACTGGAGATGATCAGATATCAATACTCAAATCGTCGCTTGAAAAACTTTCACTTGTAAATACTGAAAATTCAAAGAAAGTTAAGCTTGTTGAGTCTACATTGAGTAACAAAGAAAGAATTAGTGGAGAATCAAGTCTGCCTATGCTTAAAAACTGTTAG 2415 0.4058 MKMTVEPSYSPSPTPKEELEWFPLPKHPLFATTTTTTTTSGNVSRNLLAFDEVNNRLYFWDSKNNCLHRLSLRLGDPDPTSVLAASPSKVLQTDVVLDFDVNKISINRNGSAILLFGSQRLCVMYLYGRTSKKDVNLVCRTITVGSHTHSIGNNDIPVLEALWHPYSDTHLGILSSDSIFRLFNLAVDPLQPEQEYYLQASGSGRSKNASSMCPVGFSFGGDHLWDRFSVFVAFSDGSIYVICPVVPFGSLFICESLLEIYNDAHTFGLMSANSVAASNSKLAISWLEATFPELQKQEIEGDSLPLLRSHAYAVFDASIVLQGPLRRVGQSGNEDSVGRSAECEGRAVSFLYNSVSKDSILVTAWSGGQLQIDALADEIQPVWSVGSPPRLRLDSHDKILGLAMICESIASSRLEKLDHKAWLGNPPPLLRLAIVDLALPRKAESGYNISLFIDTLMPERIYSLHDGGIDSILLHFLPFTSQTNGKDDTMRTPSVHPVLNTCQSGSTSEPSLCGFVSLSDSFGYSWIVAVTLSQECVVLEMKTWNLLLPLSIDTEKERFQSAGQLNDREIQPIISKELLSGPKEVLVPWASQSLRSVAADSIEGRSTLHQYFKLFHETYVEYAHKVHLELKHHAPQLKKIINDQHNRLGEAQQKLLKVEEKECILQKRVDRAIQMHSSLEERLQRLRKLPGAHKKPLSRSERQFKSELDNFKEVELDALHSSVEAVSARMRRHMQASKASQQQKKIPGKKISTGDDQISILKSSLEKLSLVNTENSKKVKLVESTLSNKERISGESSLPMLKNC 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01846 804 Coils Coil 641 661 - -
Tsu03g01846 804 SUPERFAMILY WD40 repeat-like 51 242 IPR036322 GO:0005515
Tsu03g01846 804 PANTHER NUCLEOPORIN NUP84-RELATED 11 790 IPR037700 GO:0000055|GO:0000056|GO:0006913|GO:0017056
Tsu03g01846 804 Coils Coil 669 689 - -
Tsu03g01846 804 Pfam Nuclear pore component 24 209 IPR019321 -
Tsu03g01846 804 Pfam Nuclear pore component 447 783 IPR019321 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01846 K14318 - gmx:100801853 1305.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01846 03 18991636 18998589 Tsu03g01846 03 18991636 18998589 ECH