Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01742 atggaacaacAAAAGGGGAAATCATGGGAAGAGTGGTCATGGTCACGTTCAGTAAGCGAAACAGTAAATGGGTCACACGAATTAACAATAAAAGGTTATTCTTTAGCTAAAGGAATGGGTGCTGGAAAATACATCACCAGTGATACTTTCAGCGTCGGTGGTTACGATTGGGCTGTTTACTTTTACCCTGATGGAAAAAACCCTGAAGATAATTCTATGTATGTTTCTGTTTTCATCGCACTTGCTAGTGATGGTACTGATGTTAGGGCTTTGTTCGAGTTAACTTTACTTGATCAAACTTCAAAGGGTAATCATAAAGTTCATAGTCACTTTGATCGTCCACTTGAAAGTGGTCCTTATACTTTGAAGTACAGAGGAAGCATGTGGGGTTACAAGCGGTTTTTTAGGAGGACGTTGTTGGAAACATCGGAGTATTTGAAGGATGATTGTCTTGTTATGCATTGTACGGTTGGTGTTGTTAAGACACGTTTTGAAGGATCCAAACAAGGTGTTATTGTGCCTGCTCCTGATATGGGCAGAgattttaagagattgtttGTATCACAAGTTGGTTGTGACATTGTTTTTAAGGTCAAGGGTGAAAGCTACAAGGCTCATAAGTTGATTCTTGCTGCTCGGTCGCCTGTGTTTAGAGCTCAGTTTTTTGGACTTGTTGGGGATCCTTCTTGTTTGGAGGAAGTAGTGGTGGAGGATATTGAGCCCTTTATCTTCAAGGCAATGCTTCTCTTCATTTACTCGGACAAACTTCCTGACATTTATGATGTTATGGGCTCAACACCTATGTGCTCTTATACTGTCATGGTGCAGCATCTATTGGCTGCTGCTGATCTCTATAATCTTGACAGGCTAAAAACATTATGTGAATCAAGATTGTGTGAAGAAATCAATACTGAGAATGTAGCCACAACACTTTCCCTTGCTGAGCAACATCACTGTCCACAGCTCAAGGCAAtctgtttaaaatttattgcaaATCCGACAAATTTGAGAGCTGTAATGCATTCCGAAGCTTTTTTGCATTTGAAAGAGAGTTGCCCCTCAATGTTATTGGAATTGTTGGAGACATTTGCATCAGTGGATGATAACTCGAGTCAGACGCTGAGCAGGAAGAGAAGTGGCAGTAGCATATATGGGCAGGATTTAGCATATGGAGGGGCAGCAGAATCAATTAATCCAAACGGTAGGCGTGTCAGGAGGCGATCATAA 1227 0.4002 MEQQKGKSWEEWSWSRSVSETVNGSHELTIKGYSLAKGMGAGKYITSDTFSVGGYDWAVYFYPDGKNPEDNSMYVSVFIALASDGTDVRALFELTLLDQTSKGNHKVHSHFDRPLESGPYTLKYRGSMWGYKRFFRRTLLETSEYLKDDCLVMHCTVGVVKTRFEGSKQGVIVPAPDMGRDFKRLFVSQVGCDIVFKVKGESYKAHKLILAARSPVFRAQFFGLVGDPSCLEEVVVEDIEPFIFKAMLLFIYSDKLPDIYDVMGSTPMCSYTVMVQHLLAAADLYNLDRLKTLCESRLCEEINTENVATTLSLAEQHHCPQLKAICLKFIANPTNLRAVMHSEAFLHLKESCPSMLLELLETFASVDDNSSQTLSRKRSGSSIYGQDLAYGGAAESINPNGRRVRRRS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01742 408 CDD MATH 24 157 IPR002083 GO:0005515
Tsu03g01742 408 SMART BTB_4 192 302 IPR000210 GO:0005515
Tsu03g01742 408 ProSiteProfiles MATH/TRAF domain profile. 23 157 IPR002083 GO:0005515
Tsu03g01742 408 Gene3D Potassium Channel Kv1.1; Chain A 168 296 IPR011333 -
Tsu03g01742 408 CDD BACK_AtBPM-like 299 362 IPR034090 -
Tsu03g01742 408 CDD BTB_POZ_BPM_plant 178 299 - -
Tsu03g01742 408 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 11 373 IPR045005 GO:0016567
Tsu03g01742 408 Gene3D - 301 382 - -
Tsu03g01742 408 SUPERFAMILY POZ domain 175 300 IPR011333 -
Tsu03g01742 408 SUPERFAMILY TRAF domain-like 20 159 - -
Tsu03g01742 408 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 22 162 IPR008974 GO:0005515
Tsu03g01742 408 SMART math_3 28 140 IPR002083 GO:0005515
Tsu03g01742 408 Pfam BTB/POZ domain 183 300 IPR000210 GO:0005515
Tsu03g01742 408 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 11 373 - -
Tsu03g01742 408 ProSiteProfiles BTB domain profile. 192 256 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01742 Tsu-Chr3 17779582 17785768 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01742 K10523 - gmx:100786636 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01742 03 17779582 17785768 Tsu03g01742 03 17779582 17785768 ECH