Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01730 atGGGGCGTCTAAAGCTGCAAACGGGTATCAATTCAATAGAGGAGGAGGAGCCTGAAGAATGCGATGCTGCCTGTCCTAATAGAACAACTTTATCGTGCATGATAAATTCAGAAATTGGTGCTGTTTTGGCAGTAATGAGAAGAAATGTAAGATGGGGAAGTCGTTATATGTCAGGCGATGATCATCTGGAGCACTCTCTTATTCAGTCTTTTAAGGCATTAAGGAGACAGATATTTTCATGGAACCACCATCAGTGGCAAGCTATCAACCCAACCCTGTATCTACAGCCTTTTCTTGATGTGATTCGGTCTGATGAAACTAGTGCAGCAATTACAGGGGTTTCTTTGTCATCTGTTTACAAGATCTTGACTCTTGATGTCATTGATCATAATACTGTCAATGTTGAGGAGGCTATTCACTTGGTGGTTGATGCTGTCACTAGCTGCAGATTTGAGGTCACTGATACTACTTCTGAAGAAGTTGTTTTAATAAAGATACTACAAGTTCTCCTAGCTTGTATGAAAAGCAAAGCGTCTGTAATGCTGAGTAACCAACATGTTTGCACCATAGTCAATACTTGTTTCCGTATAGTTCATCAAGCTGGAAACAAAGGCGAGTCATTGCAGCAGATATCACGGTACACAATGCATGAACTTGTGAGGTGTATTTTTTCTCACCTTCAAGATGTTGACAACACAGACCATGCATTGGTTAATGGAAACTCTAACTTGAAACAAGAGACTGGAGGCCTAAATAATGAGTATGCTTTCGGAAGTCGAAAGTTGGAGAATGGAAGCATGAACTCTGAATATGATAATCAGCCGCTATCTGCCAACTTTGCTTCGAATTCTGCAAGTGCAGTGACAGTAACCATGATGGATGAAAGCACAGCGATAGCTCTCACTGGCAAGGAGAGTGCATCATATGACGTGCATCTCATGACTGAACCATATGGTGTTCCTTGCATGGTGgaaatttttcactttttgtgTTCTTTGCTGAATGTTATTGAGAATATGGAACTGGGTCCTAGATCAAACACTATAGCATTTGATGAAGATGTACCCCTCTTTGCTTTAACTTTAATAAATTCAGCTATAGAACTTGGAGGGCCTTCTATTCACCGTCACCCAAGGTTGCTAAGCTTAATTCAGGACGAGCTTTTTCATAATCTGATGCAATTTGGTTTGTCAATGAGTCCTCTTATACTTTCAATGGTGTGTAGCATTGTTCTCAATCTGTATCATCATCTTCGTACAGAACTCAAATTACAGCTAGAAGCATTTTTTTCTTGTGTCATTTTGAGACTTGCACAAAGCAGATATGGGGCTTCATATCAGCAACAAGAGGTAGCCATGGAAGCCCTTGTCGACTTCTGCAGACAAAAGACATTTATGGTTGATATGTATGCTAACTTTGATAGTGACATAACTTGTAGTAATGTCTTTGAAGACCTTGCTAATTTGCTGTCAAGAAGTGCATTTCCTGTGAACTGTCCGTTGTCTGCTATGCACATTCTTGCTTTGGATGGTCTTATTGCCGTTATACAGGGAATGGCTGAAAGGATAACCAATGGATCTGCAGACTCAGAATATTCTCCAGTAAATCTTGAAGAGTATATTCCATTCTGGATGGTTAAATGTGAAAATTATGGTGATCCAAATCATTGGGTTCCTTTCACCCGTCGCAGAAAGTACATAAAGAGAAGATTGATGATTGGTGCTGACCACTTCAATCGTGATCCTAAGAAAGGTCTGGAGTTTCTCCAGGGAACACATCTTTTGCCCAACAAACTTGATCCCCAAAGTGTGGCTTGCTTTTTCAGATACACTGCTGGGTTGGATAAGAATCTTGTTGGCGATTTTCTTGGAAATCATGATGAGTTTTGTGTTCAGGTTCTTCATGAATTTGCTGGAACATTTGATTTCCAAGATATGAACTTAGACACAGCCCTTCGTCTATTTCTGGAGACTTTCAGACTGCCTGGAGAATCACAAAAGATACATAGGGTGCTTGAAGCTTTCTCTGAGAGATACTATGAACAGTCACCACATATCCTAGCTAACAAGGATGCTGCTCTTGTGTTATCATACTCAATGATAATGCTTAATACAGACCAGCATAATGTGCAGGTTAAAAAGAAGATGACAGAAGAGGATTTTATCCGGAATAATAGGCATATAAATGGTGGCAGTGACCTTCCTCGAGAATTCTTATCAGAGATTTATCATTCAATTTGTAAGAATGAAATCCGCACAACCCCTGAACAAGGTGTTGGGTTTCCTGAAATGACACCAAGTCGATGGATCGACCTACTGCACAAGTCAAAGAAAACTGCTCCATTTATTGTATCTGGTTCCAAGGCCTACCTTGATCATGATATGTTTGCCATAATGTCAGGCCCAACTATTGCTGCCATTTCTGTTGTATTCGATCATGCCGAACATGAAGAGGTCTACCAAACATGTATGGACGGATTCCTAGCTATTGCTAAGATATCTGCTTGCCATCATCTTGAAGATGTTCTTGATGATCTGGTAGTGTCACTTTGTAAGTTCACCACACTTTTAAACCCATCATTGGTTGAGGAACCAGTCCTTGCCTTTGGAGATGACATGAAAGCAAGAATGGCAACTGTAACAGTATTCACTATTGCAAATAGGTATGGTGATTACATACGCACAGGTTGGAGAAATATTCTTGATTGCATTTTAAGATTGCACAAGCTAGGTCTTCTTCCTGCCCGTGTTGCCAGCGATGCAGCCGATGAGTCAGAGCTTTCTGCCGAAACTGTGCATGGCAAGCCTATTGTGAATTCTTTATCTTCAGCTCATATGCAGTCCATTGGCACACCAAGGAGATCCTCAGGATTGATGGGTAGGTTTAGTCAACTCTTATCTCTTGACACTGAGGAGCCAAGATCACAACCTACTGAACAACAGCTTGCTGCTCATCAGCGCACTCTTCAAACAATTCAGAAGTGTCACATTGACAGCATATTCACCGAGAGCAAATTTCTGCAAGCTAAATCTCTTGAACAGCTTGCAAAAGCGCTCATTTGGGCTGCAGGTCGACCTCAAAAAGTGAACAGCACACCAGAGGATGAAGATACAGCTGTTTTCTGCCTGGAGCTGCTGATTGCAATAACTTTGAATAACAGGGATAGAATAGGGATTCTTTGGCCAGGTGTATATGACCACATATCCAATATTGTTCAGTCAACTGTAATGCCCTGTGCCTTGGTAGAGAAGGCCGTTTTTGGACTCCTGCGGATTTGCCAGCGATTGCTCCCCTACAAAGAAAACATTGCTGATGAACTTTTGAGATCGTTGCAACTTGTCTTAAAGCTTGATGCGCGGGTTGCCGATGCTTACTGTGAACAAATTACTCAGGAAGTCAGCCGCCTTGTGAAGGCAAATGCTTCTCACATAAGATCTCAGTTAGGATGGCGTGCAATTACATCACTGCTTTCCATCACTGCGAGGCACATAGAAGCATCCGAGGCTGGGTTTGATGCACTTCTTTTCATTATGTCTGATGGTGCCCACTTGCTTCCAGCTAATTATGTTCTCTGCGTAGATACTGCAAGGCAGTTTGCTGAGTCTCGTGTTGGCCAAGCTGAGAGATCTGTGCGGGCACTAGATCTCATGACAGGGTCTGTCAATTGCTTGACCCGGTGGACTAGCGAGGCTAAGGAAGCAATGGAGGAGGAGCAAATGTCTAAGTTGTCTAAGGATATAGGAGACATGTGGTTGATACTAGGACAAGGTCTAAGGAAAGTGTGTTTAGACCAGAGAGAGGAGGTTAGAAATCATGCTTTATTATCTTTGCAGAAGTGTTTGATAGGAGCAGATGACATTTATCTCCCATATGGTAAGTGGTTAGACTGTTTCGATCTTGTGATCTTCACCGTGCTTGATGATCTTCTTGAGATTTCACAGGGACACTCGCAGAAGGACTATCGCAATATGGAAGGCACCCTTATCTTAGCAGTGAAGCTCTTGTCCAAAGTTTTTCTTCAATCGCTCCCAGTTTTGTCACAATTAACAACCTTTTGTAAGCTATGGTTAGGTGTACTGACCAGAATGGAAAAATATatgaaggtgaaggttagggggAAAAGAAGTGAGAAGCTTCAAGAAACAGTGCCCGACCTGCTTAAAAGCTCGTTGCTTTCTATGAAAATGAGGGGTATACTGGCCCAGAGGAGTGCATTGGGTGGTGACAGTCTTTGGGAATTAACTTGGCTTCATGTGAATAACATTTCGCCTTCATTGCAACTTGAGGTATTCCCTGAGCAGGATTCTGAACATTTTCAGCACAAACAGGGTGAATCGGTAGGAGGTTTGATACCTGATGAAAAGGTTTCTGTTTCTTCAAGTGAAATCGCCAGCCTTGAAGATGCTGGCATTGTTGGTTAA 4422 0.4161 MGRLKLQTGINSIEEEEPEECDAACPNRTTLSCMINSEIGAVLAVMRRNVRWGSRYMSGDDHLEHSLIQSFKALRRQIFSWNHHQWQAINPTLYLQPFLDVIRSDETSAAITGVSLSSVYKILTLDVIDHNTVNVEEAIHLVVDAVTSCRFEVTDTTSEEVVLIKILQVLLACMKSKASVMLSNQHVCTIVNTCFRIVHQAGNKGESLQQISRYTMHELVRCIFSHLQDVDNTDHALVNGNSNLKQETGGLNNEYAFGSRKLENGSMNSEYDNQPLSANFASNSASAVTVTMMDESTAIALTGKESASYDVHLMTEPYGVPCMVEIFHFLCSLLNVIENMELGPRSNTIAFDEDVPLFALTLINSAIELGGPSIHRHPRLLSLIQDELFHNLMQFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSRYGASYQQQEVAMEALVDFCRQKTFMVDMYANFDSDITCSNVFEDLANLLSRSAFPVNCPLSAMHILALDGLIAVIQGMAERITNGSADSEYSPVNLEEYIPFWMVKCENYGDPNHWVPFTRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPNKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIHRVLEAFSERYYEQSPHILANKDAALVLSYSMIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGSDLPREFLSEIYHSICKNEIRTTPEQGVGFPEMTPSRWIDLLHKSKKTAPFIVSGSKAYLDHDMFAIMSGPTIAAISVVFDHAEHEEVYQTCMDGFLAIAKISACHHLEDVLDDLVVSLCKFTTLLNPSLVEEPVLAFGDDMKARMATVTVFTIANRYGDYIRTGWRNILDCILRLHKLGLLPARVASDAADESELSAETVHGKPIVNSLSSAHMQSIGTPRRSSGLMGRFSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAKSLEQLAKALIWAAGRPQKVNSTPEDEDTAVFCLELLIAITLNNRDRIGILWPGVYDHISNIVQSTVMPCALVEKAVFGLLRICQRLLPYKENIADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANASHIRSQLGWRAITSLLSITARHIEASEAGFDALLFIMSDGAHLLPANYVLCVDTARQFAESRVGQAERSVRALDLMTGSVNCLTRWTSEAKEAMEEEQMSKLSKDIGDMWLILGQGLRKVCLDQREEVRNHALLSLQKCLIGADDIYLPYGKWLDCFDLVIFTVLDDLLEISQGHSQKDYRNMEGTLILAVKLLSKVFLQSLPVLSQLTTFCKLWLGVLTRMEKYMKVKVRGKRSEKLQETVPDLLKSSLLSMKMRGILAQRSALGGDSLWELTWLHVNNISPSLQLEVFPEQDSEHFQHKQGESVGGLIPDEKVSVSSSEIASLEDAGIVG 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01730 1473 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11 1441 - -
Tsu03g01730 1473 ProSiteProfiles SEC7 domain profile. 560 749 IPR000904 GO:0005085|GO:0032012
Tsu03g01730 1473 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 321 482 IPR032691 -
Tsu03g01730 1473 Pfam Sec7 domain 568 751 IPR000904 GO:0005085|GO:0032012
Tsu03g01730 1473 Gene3D - 561 643 - -
Tsu03g01730 1473 SUPERFAMILY Sec7 domain 565 752 IPR035999 GO:0005085|GO:0032012
Tsu03g01730 1473 SMART sec7_5 564 751 IPR000904 GO:0005085|GO:0032012
Tsu03g01730 1473 PANTHER ARF GUANINE-NUCLEOTIDE EXCHANGE FACTOR GNOM-LIKE 11 1441 - -
Tsu03g01730 1473 Gene3D - 644 760 IPR023394 -
Tsu03g01730 1473 CDD Sec7 568 751 IPR000904 GO:0005085|GO:0032012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01730 Tsu-Chr3 17655198 17662603 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01730 K18443 - gmx:100780239 2682.9