Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01725 ATGGCGAACATAGAGAGCATCAGTAGAGGCTTAAGATGGTCCCTCAAGGGAACTACTGCTTTAGTTACCGGTGGAACACGTGGAATTGGGCATGCTGTGGTGGAGGAACTGGCCGAGTTTGGTGCCACGGTGTACACGTGTGCTAGGAACGAAGAAGAGCTTAATAAATGCTTAAATGAGTGGAAAGATAAAGGTTTTTTGATTTATGGATCGGTATGCGATGCATCCTCTCCTTCTGAAAGAGAGGAACTTATTCAACAAGTAGCTTCCGCCTTCAACGGCAAGCTCAACATACTTGTAAACAATGCGGGTACAAATGTGAGAAAACCAACAATTGAGTTTACAAGAGAAGATTATTCAAAAGTGATGACTACAAATTTAGATTCTGCATTCCATCTATGCCAACTTGCTTATCCTCTTCTTAAAGAATCTGGAAATGGAAGCATTGTGTTCATTTCCTCTGTCGCATCCCTCACAAGTGTCGGTACCGCGACCGTCTATGCAATGAGTAAAGCTGCAATCAATCAACTGACAAAAAATCTTGCTTGTGAATGGGCTAAAGACAATATAAGAAGCAATTGTGTTGCACCTTGGTATACAAAAACATCACTTGTGAAAGATTTTATTGCCAACAAAGAGTTTGTAAATGAAATATTGTCTCGAACACCGATACAGCGGATAGCGGAAACACATGAAGTGTCTTCCTTAGTGACTTTCCTTTGCTTGCCAGCTGCTTCTTACATCACTGGACAAACTGTTTGTGTTGATGGAGGATTTACTGTGAATGGATTTCAACCAAGCATTAGGATTAACTAA 816 0.4093 MANIESISRGLRWSLKGTTALVTGGTRGIGHAVVEELAEFGATVYTCARNEEELNKCLNEWKDKGFLIYGSVCDASSPSEREELIQQVASAFNGKLNILVNNAGTNVRKPTIEFTREDYSKVMTTNLDSAFHLCQLAYPLLKESGNGSIVFISSVASLTSVGTATVYAMSKAAINQLTKNLACEWAKDNIRSNCVAPWYTKTSLVKDFIANKEFVNEILSRTPIQRIAETHEVSSLVTFLCLPAASYITGQTVCVDGGFTVNGFQPSIRIN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01725 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Tsu03g01725 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Tsu03g01725 271 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Tsu03g01725 271 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 154 182 IPR020904 GO:0016491
Tsu03g01725 271 Pfam Enoyl-(Acyl carrier protein) reductase 26 260 - -
Tsu03g01725 271 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 5 267 - -
Tsu03g01725 271 Gene3D - 9 263 - -
Tsu03g01725 271 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Tsu03g01725 271 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Tsu03g01725 271 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Tsu03g01725 271 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Tsu03g01725 271 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Tsu03g01725 271 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Tsu03g01725 271 PANTHER TROPINONE REDUCTASE 5 267 IPR045000 GO:0016491
Tsu03g01725 271 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 262 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01725 Tsu-Chr3 17612514 17613728 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01725 12 266 Miscellaneous Gene Families AT2G29290 58.755 1.53e-113 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01725 K08081 - gmx:100819646 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01725 03 17612514 17613728 Tsu03g01725 03 17612514 17613728 ECH