Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01716 ATGAAGTGGaaccaaaaatccaaaaaaaactcGATTCAACAAACCGGTGGTTGTATTGAAGTGATTATTGTGAAAATGGATAATCTTGAACCGGTACCAATTACATCACAAAAACATGACCCAGCATGGAAGCATTGTCAGTTATTTAAGAATGGTGAAAAAGTGCAACTAAAGTGCATATATTGTCTAAAGTTTTTTAAAGGTGGTGGGATTCATAGGTTTAAGGAACATCTTGCTTGTCAGAAAGGGAATGCTTCAATGTGCAGTAGTGTTCCTGCTGATGTTAGGCAACTTATGCAACAGAGTTTGGATGGTGTTGTGGTGAAAAAGAGGAAGAGACAGAAAATTGAGGAAGAGATTATGAATGTTAATCCTTTAGCTACTGTTTTGAATGGTGGTGGTTCAAATCAGATGGATGTGAATCTTGGGGTGCAGTCTTTTGGAGTTCATGATTCCGCCGAACAAAATTTGGGTCAGGTGTTGCATACTCCTAATGATGGAATGAGTAAAAATGTtgaaagaaggaagaagattAGAGCTACtaagaataataatactaataatcaTGCAGCAGCAGCACTGGTTTATACAACAAACTCTGAGCCCGAGCCTGTTGTTGCCCCCATGGAGAAAAGTGCATTTTTCCCTAAAAAGGTGGACAATCGCATTCATATGGCAATAGGTCGGTTTTTGTATGATATTGGTGCGCCTTTTGATGCTGTGAATTCGGTCTATTTTGATCAAATGGTTGAAGCAATTGCTTCTGGGGGCTCGGATTTTCAACGTCCCTCTCATCATGAACTTCGGGGTTGGGTCCTGAAAAATTCTGTGGATGATGTGAAGAATGATATAGATAGATGTAAGATGACATGGGGGAGGACTGGCTGTTCCATTTTGGTTGACCAATGGACTACAGAAGCTGGTAGAATACTGATAAGTTTTTTGGCTTATTGTCCTGAAGGTGTAGTCTTTCTGAAATCCTTGGATGCAACCGAGATATTGACTTCGGCGGAATTTTTATGTGAGTTGATAAAACAAGTGGTAGAGGAAGTTGGAGTAGGGCAAGTTGTGCAAGTGATTACATCAGGCGAAGAACAGTATGCTGTTGCTGGGAAAAGGCTGACTGATATTTACCCTAGCCTTTATTGGAGCCCTTCTGCGGCTCATTGCATTGATTTGATACTTGAAGATTTTGGAAATCTCGAGTGGATTAGTGCAGTAATTGAACAAGCTAAATCTATAACAAGATTTGTCTACAATTACAGTGCAATTTTGAATATGGTTAGAAGGCTGTGGCATCATCCTCTTCAAGCCGCAGGCTTCTTTCTTAATCCGAAGTTCTTCTATAGCATTCAAGGGGATGTACACAATGAGATTCTCTCAGGGATGTTTGATTGCATAGAGAGATTGGTACCTGATACAAGAGTCCAAGATAAAATTATCAAAGAGTTAAACTTGTACAAGTCTGCTGCAGGTGACTTTGGGAGAAAGATGGCAATCAGAGCAAGAGATAATCTTCTTCCTTCTGAATGGTGGTCAACATATGGAGGAGGTTGCCCGAACTTGTCACGCTTAGCAATTCGAATCCTTAGCCAAACATCAAGTGTGATGTTCTGCAAGAGAAATCAAATTCCTTTTGAACAGATAATCAATACAAGGAATCGTATAGAGCGCCAACATCTTACCGATCTTGTCTTTGTTCATTACAACTTACGATTGAGACAAATGTTTACGAGTAAAGAACAAGAATCCAATGATCCCTTGTCATTCGACAACATTTATAACGTTGAAGACTGGATCAGGCCAAGGGATTTATACGTTGAAGAGTATGGGAACTCGGATTGGATGGCACTAGATTCATCTTCCATTAACACAATGCTTTTAAGGCCTTTAAATAATGAACCTGAAGAAATGTGCCAAGGGTTTGATGATCAGGAAATTTTCATGAGTCTGAAAGATGGTGAGGATGAGCATATCGGAGACAAGTTTGGACATCATTag 2001 0.3878 MKWNQKSKKNSIQQTGGCIEVIIVKMDNLEPVPITSQKHDPAWKHCQLFKNGEKVQLKCIYCLKFFKGGGIHRFKEHLACQKGNASMCSSVPADVRQLMQQSLDGVVVKKRKRQKIEEEIMNVNPLATVLNGGGSNQMDVNLGVQSFGVHDSAEQNLGQVLHTPNDGMSKNVERRKKIRATKNNNTNNHAAAALVYTTNSEPEPVVAPMEKSAFFPKKVDNRIHMAIGRFLYDIGAPFDAVNSVYFDQMVEAIASGGSDFQRPSHHELRGWVLKNSVDDVKNDIDRCKMTWGRTGCSILVDQWTTEAGRILISFLAYCPEGVVFLKSLDATEILTSAEFLCELIKQVVEEVGVGQVVQVITSGEEQYAVAGKRLTDIYPSLYWSPSAAHCIDLILEDFGNLEWISAVIEQAKSITRFVYNYSAILNMVRRLWHHPLQAAGFFLNPKFFYSIQGDVHNEILSGMFDCIERLVPDTRVQDKIIKELNLYKSAAGDFGRKMAIRARDNLLPSEWWSTYGGGCPNLSRLAIRILSQTSSVMFCKRNQIPFEQIINTRNRIERQHLTDLVFVHYNLRLRQMFTSKEQESNDPLSFDNIYNVEDWIRPRDLYVEEYGNSDWMALDSSSINTMLLRPLNNEPEEMCQGFDDQEIFMSLKDGEDEHIGDKFGHH 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01716 666 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 22 430 - -
Tsu03g01716 666 PANTHER OSJNBA0013A04.12 PROTEIN 430 639 - -
Tsu03g01716 666 PANTHER OSJNBA0013A04.12 PROTEIN 22 430 - -
Tsu03g01716 666 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 430 639 - -
Tsu03g01716 666 Pfam Protein of unknown function (DUF 659) 263 414 IPR007021 -
Tsu03g01716 666 Pfam hAT family C-terminal dimerisation region 483 571 IPR008906 GO:0046983
Tsu03g01716 666 SUPERFAMILY Ribonuclease H-like 296 573 IPR012337 -
Tsu03g01716 666 ProSiteProfiles Zinc finger BED-type profile. 37 95 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01716 Tsu-Chr3 17528186 17533856 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01716 - - aprc:113850304 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01716 03 17528186 17533856 Tsu03g01716 03 17528186 17533856 ECH