Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01710 ATGGGTTGCGTCATCAGCAAAAACGCCGAGACCAAAGCGAATCGAACCGCTCGCTGGCGATCCACTGGCATTGTTGCTCTTCGTGATTCCAAATTGAAGACTTTTCCAGATGAAGTTCTTGATTTAGACAGATCCGTACGTACTCTTGACTTAACACATAATCGAATAGTTGACATTCCCATGGAAATTAGCAAATTGATTAATATGCAGCGCCTGGTATTAACAGACAACCTCATCGATAGACTGCCAGTGAATTTGGGGAAACTCCAATCTCTTAAACTTGTGAACCTTGATGGAAATAAAATTACTTCCTTGCCCGATGAATtggGCCAATTAGTAAGGCTTGAACGCTTATCCATCTCAGGGAATTTGTTAACATCCTTGCCGGCAACTATTGGCAGTTTGAGAAACCTATTGATTTTAAATGTCTCAAATAACAAGTTACAGTCTCTTCCAGAATCTATCGGGAGTTGCTTCTCTTTGGAAGAATTACAAGCCAATGATAATCTTATTGAAGATCTTCCTTCTTCGGTGTGCAATCTCTCTCACTTGAAGTCACTGTGCTTAGACAACAATAATGTGAAGCAgATACCTCTGAATCTTTTGAAAGATTGCAAAGCTCTTCAGAACATATCGCTGCATGGTAATCCTATATCAATGGATCAATTTCAACAGATGGATGGGTTTCAAGAGTTTGAAGcaagaaggaaaaagaaatttgacaaGCAAATTGATTCAAATGTAATGATCGGTTCCAAAGGTCTCGATGAGGGTGTCGATCTATGA 786 0.3842 MGCVISKNAETKANRTARWRSTGIVALRDSKLKTFPDEVLDLDRSVRTLDLTHNRIVDIPMEISKLINMQRLVLTDNLIDRLPVNLGKLQSLKLVNLDGNKITSLPDELGQLVRLERLSISGNLLTSLPATIGSLRNLLILNVSNNKLQSLPESIGSCFSLEELQANDNLIEDLPSSVCNLSHLKSLCLDNNNVKQIPLNLLKDCKALQNISLHGNPISMDQFQQMDGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVDL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01710 261 ProSiteProfiles Leucine-rich repeat profile. 45 66 IPR001611 GO:0005515
Tsu03g01710 261 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN-RELATED 2 253 - -
Tsu03g01710 261 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Tsu03g01710 261 ProSiteProfiles Leucine-rich repeat profile. 183 203 IPR001611 GO:0005515
Tsu03g01710 261 ProSiteProfiles Leucine-rich repeat profile. 137 158 IPR001611 GO:0005515
Tsu03g01710 261 Gene3D Ribonuclease Inhibitor 5 242 IPR032675 -
Tsu03g01710 261 SMART LRR_bac_2 160 177 - -
Tsu03g01710 261 SMART LRR_bac_2 181 200 - -
Tsu03g01710 261 SMART LRR_bac_2 112 131 - -
Tsu03g01710 261 SMART LRR_bac_2 89 108 - -
Tsu03g01710 261 SMART LRR_bac_2 135 154 - -
Tsu03g01710 261 Pfam Leucine rich repeat 44 102 IPR001611 GO:0005515
Tsu03g01710 261 Pfam Leucine rich repeat 114 171 IPR001611 GO:0005515
Tsu03g01710 261 PANTHER LEUCINE-RICH REPEAT-CONTAINING 2 253 - -
Tsu03g01710 261 SUPERFAMILY L domain-like 24 221 - -
Tsu03g01710 261 SMART LRR_typ_2 112 134 IPR003591 -
Tsu03g01710 261 SMART LRR_typ_2 135 158 IPR003591 -
Tsu03g01710 261 SMART LRR_typ_2 89 111 IPR003591 -
Tsu03g01710 261 SMART LRR_typ_2 66 88 IPR003591 -
Tsu03g01710 261 SMART LRR_typ_2 181 204 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01710 Tsu-Chr3 17462203 17469006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01710 49 216 Receptor kinase-like Gene Family AT5G46330 37.853 3.98e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01710 - - gmx:100807758 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01710 03 17462203 17469006 Tsu03g01710 03 17462203 17469006 ECH