Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu03g01705 | atgttTGGTTCAAAGAAAACATCTCCTTTGAAAGATGCTAAACCTAGGTCTAAGCATAACCCCTTTGATTCTGATGAAGACAAAAAGGATAACAAAAAGTATAATAATTCTTCAAAGAAGACGTCTTCGGAATATAACTTAGTTCAAGGAGAAACTAATACCAATCCctttgatgatgttgatacTCGTGGTCATTCTTCATCGTCTTCTTATGCTCCGTCGTACGGCAATCGACACATGTATAAGAATGATTTCCGTGAATCTGGAGGATTGGAGAGTCAATCAGTGGAGGATTTGGAGAACTATGCTGTTTACAAGGCTGAGGAGACTACAAAATCGGTAAATAATTGTCGGAAGATAGCAGAGGAAATGCGAGAGGAAGCCAGCAATACTTTGGTTATGCTGCATCATCAAGGCGAGCAGATTACAAGGAGTCATGATATTGCTGCAGGCATTGACCATGATTTAAGCAGGgGAGAAAAACTTTTGGGAAGTCTCGGTGGGATATTCTCCAAAACATGGAAACCAAAGAAGACAGGCGCAATAAAAGGCCCTACAATATTTGGAGATGATCCAGTCCGAATAAGCGCCAACCACTTGGAGCAACGAGAGAAGTTAGGATTGAATTCTGCCCCTAAAGGACAGTCAAAGCCAAGGAAAACACTTTCTGAGCCAACAAATGCATTCGAAAGAGTCGAGGTTGAGAAAGGAAAGCAAGATGATGCACTGTCAGATATAAGTGATCTCTTGGGAGAACTTAAAGGCATGGCCATTAACATGGGAACTGAAATTGAGAGGTAA | 801 | 0.4007 | MFGSKKTSPLKDAKPRSKHNPFDSDEDKKDNKKYNNSSKKTSSEYNLVQGETNTNPFDDVDTRGHSSSSSYAPSYGNRHMYKNDFRESGGLESQSVEDLENYAVYKAEETTKSVNNCRKIAEEMREEASNTLVMLHHQGEQITRSHDIAAGIDHDLSRGEKLLGSLGGIFSKTWKPKKTGAIKGPTIFGDDPVRISANHLEQREKLGLNSAPKGQSKPRKTLSEPTNAFERVEVEKGKQDDALSDISDLLGELKGMAINMGTEIER | 266 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu03g01705 | 266 | CDD | SNARE_Qc | 238 | 266 | - | - | |
| Tsu03g01705 | 266 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 266 | - | - | |
| Tsu03g01705 | 266 | CDD | SNARE_SNAP25N_23N_29N_SEC9N | 101 | 165 | IPR044766 | GO:0005484|GO:0031201 | |
| Tsu03g01705 | 266 | Gene3D | - | 90 | 167 | - | - | |
| Tsu03g01705 | 266 | Coils | Coil | 107 | 127 | - | - | |
| Tsu03g01705 | 266 | PANTHER | SYNAPTOSOMAL ASSOCIATED PROTEIN | 1 | 266 | - | - | |
| Tsu03g01705 | 266 | MobiDBLite | consensus disorder prediction | 205 | 230 | - | - | |
| Tsu03g01705 | 266 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
| Tsu03g01705 | 266 | MobiDBLite | consensus disorder prediction | 38 | 76 | - | - | |
| Tsu03g01705 | 266 | Gene3D | - | 220 | 266 | - | - | |
| Tsu03g01705 | 266 | SUPERFAMILY | SNARE fusion complex | 94 | 164 | - | - | |
| Tsu03g01705 | 266 | SUPERFAMILY | SNARE fusion complex | 232 | 265 | - | - | |
| Tsu03g01705 | 266 | MobiDBLite | consensus disorder prediction | 9 | 37 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu03g01705 | Tsu-Chr3 | 17409452 | 17412923 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu03g01705 | K18211 | - | gmx:100806698 | 369.777 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu03g01705 | 03 | 17409452 | 17412923 | Tsu03g01705 | 03 | 17409452 | 17412923 | ECH |