Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01645 ATGGGAGATCAACCAATAACCAGGGTAGACATCGATGGATTTACCGCATCCCTAAATGCTTTGGCTGCACAAATAACGATGTTATCAAATcgtttgaacaacaacaacagaaacGATAACCAcaacgacaacaacaacaacaacaacaacgacAACAaccgaaacaacaacaacaactgcAACAACAGGGGTGAAGAACCAATTCCGGTTATTAGGGTTCATAATAACAATCATATTCTTGATACTATTACGTACAGAAAATTAGAACATACTCGTGAATCTGATTTGGAATACTATGAACATAGATATTACAAAAAGTTGAAGGATGATTACTACGAGTTTAAAATCTCTGATTCAATATATCGGTGTCCGTTTTGCAACAATAAAGATTACTCCTTGACTGACCTTTTGAGACATGCTTCTAGAATGGCAGGTAACTCGCGTAACACGATTAAAGATATTGCTAAACATTCTGTTTTGATAACGTATATTGAAAGACAAAGAACTTGCATTGTCAAAGGATTTGATGCTATAGTACTTGACATCGAAAAGAATTTGCAGCCTTCTAAGTCAAAAAGAGAGAAGCTTCATGAATATGAGCAACGGTGCCGCAAAATATTTTCGGTCCCTGATACTCAATCTAATTCTGAAAAGGTTGATGTTAATGTAAACTTTGAGAACCAGAATGAGACTGATGTTATGCATATAAGCTCTACCGCCATTGTGGAGTTATTAGATGAGTTAACAATTTGTTATCTCAAGTTAGAGGAGAAAAATCGAGcttttaaagaagaaaagagttgGTATAAGGGTGATTTTAGTAATGCCTGCAAtgtgtttgatgaaatgatgCAAAGAAGAGTTGAACCTAATGTGGTTGTGTACACTATTCTTATTCGTGTTTTTTGTAATGAGGGTGAAATGGAAGAAGCTCAGAGGGTTTTTAAGTTGATGAGGGAAAATGGGGTTGATCCGAATTTGCATACTTATGTTACTCTCATTGATGGATATTGCAAAATGGGTAATGTTAAACgtgtttttgaaatttatagTGATATGCTATGGAATGGTTTGCATCCTGATGTTGTGACATTTGCAAATTTGGTTGATGTTTTGTGTAAGGTGGCTGATTTGAAGGCTGCGCGAAACTGCTTTGTTTATATGGATAAATTTGGTGTTTTTCCTAATTCATATGtttataattgtttgattgatgGTTATTGTAAGGCAGGGGATTTGGTTGAAGCAATGCAATTGCGAGCTGAAATGGAACGGAATGGAGTTTCCGGTGATGTTTTTACATGTAGTATTCTTGTTAAGGGTTTATGTGACTTGGGTAGgtttgaggaagctaaggatttGATGGAGGAGATGGGAAAAGCAGGGGTTTTTGCTAATGTTGTGACTTACAATGTGGTTATTGATGGATACTGTAAAACGGGTGACATGGAGGAGGCTATTGAGGTGTGTTTACAAATGACTGAAAGGAAGATAGACCCCAATGTGATCACATTTTCTACATTGATTGATGGGTTTTGCAAGAAAGGGAACATAAAAGCTGCCATGGGGTTATATACAGAAATGGTTATTAAAGGTCTTGTGCCTGATGTGGTGACTTACACGGCTTTAATCGATGGGCATTGCAAGGTTGGGAACAACAAAGAGGCTTTCGAACTGCACAAGGAGATGCTTGGCGCGGGACTAACGCCGAATGCATTGACAGTTACTTGTTTGATTGATGGCCTTTTGAAAGATGGAAGGACTAACCGTGCAATCAAACTTTTCTTGGAGAAAACTGGAGTTGGTTGCCCTGGAAGTAAAATGGATCATAGCAGGCTGTGTTCTCCTAATGATGTTATGTATGCTGCTTTAATTCAAGGTTTATGTAAATATGGGCACGTGTTTAAGGCCACTAAGTTTTTTGCAGAAATGAGAGGTAGTGGTTTCAAACCAGACACGGGGCTTTATGTTATCATGTTGGAGGCACATTTTGGATTCAAGCACATGGTTGATGTAATGATGTTGCATGCAGACATGCTGAAGATGGGAGTTATGAGAAATAGTTCTATATATCATGTGTTGTCTAGGGGCTATAAAGAGAATGAATATCTTAAACCAGCTCAAATGTGTTATGAGCATTTAATGGAATATGACATTCAGTGTAAAGAATCTTGA 2175 0.3471 MGDQPITRVDIDGFTASLNALAAQITMLSNRLNNNNRNDNHNDNNNNNNNDNNRNNNNNCNNRGEEPIPVIRVHNNNHILDTITYRKLEHTRESDLEYYEHRYYKKLKDDYYEFKISDSIYRCPFCNNKDYSLTDLLRHASRMAGNSRNTIKDIAKHSVLITYIERQRTCIVKGFDAIVLDIEKNLQPSKSKREKLHEYEQRCRKIFSVPDTQSNSEKVDVNVNFENQNETDVMHISSTAIVELLDELTICYLKLEEKNRAFKEEKSWYKGDFSNACNVFDEMMQRRVEPNVVVYTILIRVFCNEGEMEEAQRVFKLMRENGVDPNLHTYVTLIDGYCKMGNVKRVFEIYSDMLWNGLHPDVVTFANLVDVLCKVADLKAARNCFVYMDKFGVFPNSYVYNCLIDGYCKAGDLVEAMQLRAEMERNGVSGDVFTCSILVKGLCDLGRFEEAKDLMEEMGKAGVFANVVTYNVVIDGYCKTGDMEEAIEVCLQMTERKIDPNVITFSTLIDGFCKKGNIKAAMGLYTEMVIKGLVPDVVTYTALIDGHCKVGNNKEAFELHKEMLGAGLTPNALTVTCLIDGLLKDGRTNRAIKLFLEKTGVGCPGSKMDHSRLCSPNDVMYAALIQGLCKYGHVFKATKFFAEMRGSGFKPDTGLYVIMLEAHFGFKHMVDVMMLHADMLKMGVMRNSSIYHVLSRGYKENEYLKPAQMCYEHLMEYDIQCKES 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01645 724 TIGRFAM PPR: pentatricopeptide repeat domain 468 502 IPR002885 -
Tsu03g01645 724 TIGRFAM PPR: pentatricopeptide repeat domain 503 537 IPR002885 -
Tsu03g01645 724 TIGRFAM PPR: pentatricopeptide repeat domain 619 653 IPR002885 -
Tsu03g01645 724 TIGRFAM PPR: pentatricopeptide repeat domain 433 466 IPR002885 -
Tsu03g01645 724 TIGRFAM PPR: pentatricopeptide repeat domain 538 572 IPR002885 -
Tsu03g01645 724 TIGRFAM PPR: pentatricopeptide repeat domain 293 326 IPR002885 -
Tsu03g01645 724 TIGRFAM PPR: pentatricopeptide repeat domain 328 362 IPR002885 -
Tsu03g01645 724 TIGRFAM PPR: pentatricopeptide repeat domain 398 431 IPR002885 -
Tsu03g01645 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Tsu03g01645 724 PANTHER OSJNBA0060P14.6 PROTEIN 269 703 - -
Tsu03g01645 724 Gene3D Tetratricopeptide repeat domain 606 720 IPR011990 GO:0005515
Tsu03g01645 724 Gene3D Tetratricopeptide repeat domain 268 377 IPR011990 GO:0005515
Tsu03g01645 724 Gene3D Tetratricopeptide repeat domain 495 600 IPR011990 GO:0005515
Tsu03g01645 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Tsu03g01645 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 617 651 IPR002885 -
Tsu03g01645 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Tsu03g01645 724 Pfam XS zinc finger domain 123 158 IPR005381 GO:0031047
Tsu03g01645 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Tsu03g01645 724 Pfam PPR repeat family 395 444 IPR002885 -
Tsu03g01645 724 Pfam PPR repeat family 466 514 IPR002885 -
Tsu03g01645 724 Pfam PPR repeat family 535 584 IPR002885 -
Tsu03g01645 724 Pfam PPR repeat family 290 339 IPR002885 -
Tsu03g01645 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Tsu03g01645 724 MobiDBLite consensus disorder prediction 32 64 - -
Tsu03g01645 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Tsu03g01645 724 PANTHER ATPASE EXPRESSION PROTEIN 3 269 703 - -
Tsu03g01645 724 SUPERFAMILY HCP-like 271 499 - -
Tsu03g01645 724 Coils Coil 245 265 - -
Tsu03g01645 724 Gene3D Tetratricopeptide repeat domain 378 494 IPR011990 GO:0005515
Tsu03g01645 724 Coils Coil 18 38 - -
Tsu03g01645 724 MobiDBLite consensus disorder prediction 32 67 - -
Tsu03g01645 724 Pfam PPR repeat 614 645 IPR002885 -
Tsu03g01645 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Tsu03g01645 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01645 Tsu-Chr3 16638274 16642520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01645 270 720 Glycosyltransferase AT1G05670 28.118 1.41e-46 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01645 - - lja:Lj1g3v0525420.1 632.869