Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu03g01644 | ATGCTGATGAACAATGTTGAACCTGATCAAGTCGTTGTGACGGTTGCTCTCTCGGCTTGTGCTGATACTGGGGGACTTAAAATGGGTGAATGGATTCATGATTTTGTTCGACGTAAAGAAGGGTTGAAGATAGATTTGTGTTTGAATAATGCTTTCATAAATATGTATGCTAAATGTGGTGATATTGTAAATGCAAGGAAGTTGTTTGATAGTACAAGAAACAAAGATGTCACAACTTGGACTTCTATGATTGTAGGGCATGCACTACATGGACAAGCACATGAAGCTCTACAACTTTTCTCGCAAATGAACACAGGGAGGGACAAGAAAAATTTGAGTTCCTCTAACTTTATTGTATCGCCGAATGATGTAACGTTCATTGGAGTTTTAATGGCTTGCAGCCATGCAGGGTTGGTCGAGGAAGGGAAATGTCATTTCAGAAGTATGATTGAAGATTACGGTATACAACCTAGAGAGCCTCATTTCGGCTGCATGGTGGATCTCTTATGCAGAAACGGGAATCTGAGAGATGCCTATAACTTCATTATGGAGATGTCAGTGCCTCCGAATGCAGTAATCTGGCGAACCTTGCTGGGGGCGTGCAGCCTCCATGGCGATTTAGAGCTAGGTACAGAAGTTCGACATAAGCTTCTCGACTTGGACCCTGACTATGTTGGTGATAGTGTTGCTATGTCGAATATTTATGCGGATAAAGACATGTGGAATAAAAAGATTATTGTTAGGAATCAAATTAAAACACCAAGACCTCCTGGCTTCAGTTCAGTTGAGGTGGGAAGTGTCTTTGCTTGCTTTCAGTTTAAAGCAGAATTGATTATTCCATATTACTCTAGCCTACATGCCGATTTAGAGCAAGCTACAGAAGTTCGGCATAAATTGCTCAACTTGGACCCTGGCTATGTTGGTGACAGTGTTGCTATGTCGAATATTTATGCAGATAAAGACATGTGGAATAAAAAGGTTATTTGTAGGAATCAGGTTAAACAATCAAAAGTTCTTGGCTACAGCTTTATTAAGGTGGGAAGTGTGGTTAGTCAATTTTTAACTTCAAATGATAATTTTCCTTTAACGATAAATATATGA | 1101 | 0.3969 | MLMNNVEPDQVVVTVALSACADTGGLKMGEWIHDFVRRKEGLKIDLCLNNAFINMYAKCGDIVNARKLFDSTRNKDVTTWTSMIVGHALHGQAHEALQLFSQMNTGRDKKNLSSSNFIVSPNDVTFIGVLMACSHAGLVEEGKCHFRSMIEDYGIQPREPHFGCMVDLLCRNGNLRDAYNFIMEMSVPPNAVIWRTLLGACSLHGDLELGTEVRHKLLDLDPDYVGDSVAMSNIYADKDMWNKKIIVRNQIKTPRPPGFSSVEVGSVFACFQFKAELIIPYYSSLHADLEQATEVRHKLLNLDPGYVGDSVAMSNIYADKDMWNKKVICRNQVKQSKVLGYSFIKVGSVVSQFLTSNDNFPLTINI | 366 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu03g01644 | 366 | Pfam | PPR repeat | 124 | 152 | IPR002885 | - | |
| Tsu03g01644 | 366 | Pfam | PPR repeat | 50 | 72 | IPR002885 | - | |
| Tsu03g01644 | 366 | Pfam | PPR repeat | 79 | 103 | IPR002885 | - | |
| Tsu03g01644 | 366 | Pfam | PPR repeat | 162 | 185 | IPR002885 | - | |
| Tsu03g01644 | 366 | PANTHER | - | 284 | 359 | - | - | |
| Tsu03g01644 | 366 | PANTHER | - | 1 | 267 | - | - | |
| Tsu03g01644 | 366 | Gene3D | Tetratricopeptide repeat domain | 115 | 262 | IPR011990 | GO:0005515 | |
| Tsu03g01644 | 366 | Gene3D | Tetratricopeptide repeat domain | 1 | 114 | IPR011990 | GO:0005515 | |
| Tsu03g01644 | 366 | PANTHER | - | 1 | 267 | - | - | |
| Tsu03g01644 | 366 | PANTHER | - | 284 | 359 | - | - | |
| Tsu03g01644 | 366 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 76 | 110 | IPR002885 | - | |
| Tsu03g01644 | 366 | TIGRFAM | PPR: pentatricopeptide repeat domain | 79 | 103 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu03g01644 | Tsu-Chr3 | 16634590 | 16636018 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu03g01644 | 5 | 361 | Glycoside Hydrolase | AT3G49170 | 19.792 | 8.60e-14 | 70.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu03g01644 | - | - | lang:109327537 | 441.81 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu03g01644 | 03 | 16634590 | 16636018 | Tsu03g01644 | 03 | 16634590 | 16636018 | ECH |