Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01574 ATGCAGAATATGTTACGATCAAAGCCCATCAGTACTCTTTCTAGCAGTGCTCGGAGCTTTTTCCTTGGTGGTACGCGATGTAATGCACCAGATGCCAATTCCTGCACTTGCAACGAGGACGAAACATGTGTGTCAGTAAGACAACAGAGGAAGAATGAAGTTTCACTTGCGCAGAAGCCAACCTCTATAGTAGCCAAAACTACATCTCGGGTAGAAGGAACCTATGTTTCAGTTAAACCGGCAAGTGGAACAGGTTCTCACAAGGTTGGGGTTGTTGATCAATCTGGCAGTGTACAACAAGTCAGGTCTACTTCAGTTCCATCGAGTAAATCAGAAACTGTAACATATGCTCATGCGGCTGGTGGTATTCAGAGTCATGATGGTGAACAGGTTTATAGGGCAGGTATTGCAGCCGTCAATTACATTTCTGATTTAGTTAATTCTAAGATTCCTTCATCAGATGGGATGGGAATACTAAACTACTCTACAAATTGTATGGTTGAACCTCCCTCTGTCATATCCAACATCAGATCTTCCAATGTGAAACAAATTAGAAAGGAGAGCTTTATCGGTGTTCATCCCAAACCACCTGTTTCTACTCAACCGGGGCCATCAAACAATACAAGTAATTATCAAGGTTCAAAGTGGAAAGGTGACAAGTCAAAGATAGGTAAAGGCTTTAAGCATGTTGCTTCTTCTGGGACGGAGAGGTCAGAGGTGGCTCCCAATATTCCTTTCAATAATCATGACAGCAGACCCTTACCGCAGAGGACAAGAACTCATTCAAATCGATTTGTCACTAAATTTGATTCCAACATGCAAACTTCAAACGCACGAATGTTGGGGTCGTTCAAGGAAAGCTTCAATAAACAACACCCCAGGGATCTGAAATCATCAGCAGGAATTGCTTCATCAAAAACACAATATACAAAGACAGGCCGCCGCGGTGTGGAAATTGTTAAAGATATATTGCAACATTTAAAGTGGGGTCCTGCTACAGAGGATGCTCTTTATAATCTGAATTATTCGATAGATGCATATCAAGGCAACCAAGTCCTAAAGCAACTTGATGACCATTCAGTTGCTCTAAGCTTCTTTTACTGGTTAAAGCGACAACCGGGCTTCCGGCATGATAATCACACTTACACAACCATGGTTGGTATCTTGGGGCGTGCAAGAGAGTTTGGTGCAATGAACAAATTGCTAGAACAGATGGTCAAGGATGGATGCAAGCCTAATACTATAACATATAATCGTGTAATTAACGGCTATGGCCGTGCAAACTACCTAAAGGAAGCGCTGAATGTCTTCAATCAAATGCAGGAGGAGCAATGTGTGCCTGATCGTGCCACTTACTGCACGCTCATTGATATCCATGCAAAAGCTGGATTTCTTGATGTGGCCATGTCCATGTATGAAAGAATGCAACAAGCTGGCCTTTCTCTCGACACGTTTACTTACAGTGTGATGATCAACTGTTTGGGAAAATCTGGTAATTTAGCTGCTGCTGACAGACTATTTTGTGAAATGGTTGATCAGGGCTGTGTTCCTAATATCGTCACCTACAATATCTTGATTGCTTTGCAAGCTAAAGCAAGGAATTATGAGACAGCATTGAGACTATATCGTGACATGCAGAATGCAGGATTTAAACCCGACAAAGTTACATATAGCATTGTAATGGAGGTGCTTGGTCACTGTGGGTATCTTGAAGAAACAGAAGCAGTTTTTGTTGAGATGAAGCAGAGGAATTGGGTTCCAGATGAACCTGTTTATGGTCTTCTGGTGGACCTATGGGGAAAGGCTGGTAATGTTGAGAAGGCTTGGGAATGGTACGCAGCAATGCTCAATGCAGGTTTGCTTCCAAATGTACCAACTTGCAATTCACTCCTCAGCGCATTTCTTAGGGTGCATCGATTGCCAGAAGCGTATAATCTTCTCCAAAGCATGGTGTCTCTCGGCCTAAGGCCTTCTTTGCAGACATATACTTTGCTTCTTAGCTGTTGTACAGATGCACAATCACAGTATGATATGGGATTTTGTTGTGAGCTGATGAAAGTCAGTGGCCATCCGGCTCATTCATTTTTACTGTCAATGCCAGCAGCAGGGCCCGATGGTCAAAATGTGAGGGATCATGCAAGCAAATTCTTGGACCTGATGCATTCAGAGGATAGAGAGGGCAAACGAGGGCTTGTAGATGCAGTGGTTGATTTTCTTCATAAATCTGGGCTCAAAGAGGAGGCCGGTTCAGTTTGGGAGGTGGCTGCACAGAGAAATGTATATCCAGATGCTGTGAAAGAGAAAGGCACCTGTTACTGGCTTATAAATCTTCATGTCATGTCTGATGGAACTGCCGTGACTGCATTGTCTAGGACACTTGCTTGGTTTCGCAATCAGATGCTGATATCTGGTGTTAGCCCTACCCGAATAGATATCGTGACTGGATGGGGCCGAAGGAGCAGGGTGACAGGTTCTTCACTTGTTAGACAGTCAGTACATGAACTGTTGCGTCTATTCAGTTTCCCTTTTTTCACCGAAAATGGAAACACAGGTTGTTTTGTAGGTTGTGGAGAGCCTCTTAGTCAATGGTTGCTCCACTCTTACGTCGAAAGAATGCATTTAGTCTAG 2628 0.4342 MQNMLRSKPISTLSSSARSFFLGGTRCNAPDANSCTCNEDETCVSVRQQRKNEVSLAQKPTSIVAKTTSRVEGTYVSVKPASGTGSHKVGVVDQSGSVQQVRSTSVPSSKSETVTYAHAAGGIQSHDGEQVYRAGIAAVNYISDLVNSKIPSSDGMGILNYSTNCMVEPPSVISNIRSSNVKQIRKESFIGVHPKPPVSTQPGPSNNTSNYQGSKWKGDKSKIGKGFKHVASSGTERSEVAPNIPFNNHDSRPLPQRTRTHSNRFVTKFDSNMQTSNARMLGSFKESFNKQHPRDLKSSAGIASSKTQYTKTGRRGVEIVKDILQHLKWGPATEDALYNLNYSIDAYQGNQVLKQLDDHSVALSFFYWLKRQPGFRHDNHTYTTMVGILGRAREFGAMNKLLEQMVKDGCKPNTITYNRVINGYGRANYLKEALNVFNQMQEEQCVPDRATYCTLIDIHAKAGFLDVAMSMYERMQQAGLSLDTFTYSVMINCLGKSGNLAAADRLFCEMVDQGCVPNIVTYNILIALQAKARNYETALRLYRDMQNAGFKPDKVTYSIVMEVLGHCGYLEETEAVFVEMKQRNWVPDEPVYGLLVDLWGKAGNVEKAWEWYAAMLNAGLLPNVPTCNSLLSAFLRVHRLPEAYNLLQSMVSLGLRPSLQTYTLLLSCCTDAQSQYDMGFCCELMKVSGHPAHSFLLSMPAAGPDGQNVRDHASKFLDLMHSEDREGKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQRNVYPDAVKEKGTCYWLINLHVMSDGTAVTALSRTLAWFRNQMLISGVSPTRIDIVTGWGRRSRVTGSSLVRQSVHELLRLFSFPFFTENGNTGCFVGCGEPLSQWLLHSYVERMHLV 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01574 875 Gene3D Tetratricopeptide repeat domain 462 563 IPR011990 GO:0005515
Tsu03g01574 875 Gene3D Tetratricopeptide repeat domain 564 679 IPR011990 GO:0005515
Tsu03g01574 875 Gene3D Tetratricopeptide repeat domain 341 461 IPR011990 GO:0005515
Tsu03g01574 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 623 657 IPR002885 -
Tsu03g01574 875 SUPERFAMILY SMR domain-like 773 853 IPR036063 -
Tsu03g01574 875 ProSiteProfiles Smr domain profile. 775 856 IPR002625 -
Tsu03g01574 875 MobiDBLite consensus disorder prediction 202 216 - -
Tsu03g01574 875 Pfam PPR repeat 591 619 IPR002885 -
Tsu03g01574 875 Pfam PPR repeat 485 515 IPR002885 -
Tsu03g01574 875 Pfam PPR repeat 381 410 IPR002885 -
Tsu03g01574 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Tsu03g01574 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Tsu03g01574 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Tsu03g01574 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Tsu03g01574 875 PANTHER BNAA07G31720D PROTEIN 4 875 - -
Tsu03g01574 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Tsu03g01574 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Tsu03g01574 875 SMART SMR_2 772 864 IPR002625 -
Tsu03g01574 875 Pfam PPR repeat family 622 669 IPR002885 -
Tsu03g01574 875 Pfam PPR repeat family 517 563 IPR002885 -
Tsu03g01574 875 Pfam PPR repeat family 412 458 IPR002885 -
Tsu03g01574 875 PANTHER OS03G0856100 PROTEIN 4 875 - -
Tsu03g01574 875 TIGRFAM PPR: pentatricopeptide repeat domain 485 519 IPR002885 -
Tsu03g01574 875 TIGRFAM PPR: pentatricopeptide repeat domain 380 414 IPR002885 -
Tsu03g01574 875 TIGRFAM PPR: pentatricopeptide repeat domain 520 553 IPR002885 -
Tsu03g01574 875 TIGRFAM PPR: pentatricopeptide repeat domain 451 484 IPR002885 -
Tsu03g01574 875 TIGRFAM PPR: pentatricopeptide repeat domain 626 658 IPR002885 -
Tsu03g01574 875 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Tsu03g01574 875 TIGRFAM PPR: pentatricopeptide repeat domain 555 589 IPR002885 -
Tsu03g01574 875 TIGRFAM PPR: pentatricopeptide repeat domain 591 624 IPR002885 -
Tsu03g01574 875 MobiDBLite consensus disorder prediction 236 257 - -
Tsu03g01574 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Tsu03g01574 875 MobiDBLite consensus disorder prediction 192 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01574 Tsu-Chr3 15554362 15558251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01574 387 807 Glycosyltransferase AT1G05670 20.331 9.73e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01574 - - gmx:100819996 1401.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01574 03 15554362 15558251 Tsu03g01574 03 15554362 15558251 ECH