Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01006 ATGAAGATCACTGTCATGacttctgatgaacaaattctcTCCTTGGATGTCGATCCTCATGAATCTGTGGAAAACGTTAAGGCATTGCTTGAGGTTGAGACAAGTGTGCCTCTTCAGCAACAACAGATTCTGTTCAATGGGAATGAAGTGAGCAATTCTCAGAAATTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTAATGATGACCGTCTCTTCTGGTGGCGCTGGTGGTGCTGCTTCTAGTGGATCTACCAATGATTTGAGCTTCAATACTGATGGATCTGCTATAAATCCTGGTGCTTTTCAGCAGCACTTTAGACGTGATTCTAATTTGATGGGTCAACTCTTTCAGAATGACCCGGAGTTGGCACAAGTTATTTTGGGGAATGATCTCAATAAACTCCAGGAAATTTTACGATTACGTCATCGCCAAAGAGATCAATTACGGCGtcagaaagaagaagagatgGCTCTTCTATATGCCGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCAATCCGCCAGAAAggaattgatgaaaattgggaAGCCGCACTCGAGCATAATCCTGAAGGTTTTGCCAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAACGGCGTACCAATGAAGGCATTTGTTGATAGTGGAGCACAATCTACCATTATATCAAAAACCTGCGCTGAACGTTTAGGATTGCTGAGACTTTTAGATCAGCGTTACAAAGGAGTTGCTCACGGAGTTGGCCAAACCGAAATATTGGGTCGAATTCATGTAGCTCCAATCAAGATTGGGAATATATTTTACCCTTGTTCATTCTTAGTGCTGGATTCTCCCAACATGGAGTTTCTCTTTGGGCTGGATATGCTCCGAAAGCATCAGTGTATAAttgatttaaaagaaaatgttttgCGAGTTGGTGGAGGAGAAGTTTCTGTGCCGTTTTTACAAGAGAAAGACATACCATCTCGGTATTTAGATGAGGAAAAATATGCCAAGGAAGCTTCAGGCTCAGGAAGTCCACGCCCAGTTGCATCAGGAAGCAATCCGTCACAAGCAGGCGCGTCTTCTGGAGGAGCTTCTGGTGACAAGTCTACGGATTCTGTGTTTGAAAGCAAAGTTGCAAAGCTTGTTGAGTTAGGATTTGATAGACAAGCAGTTATACAAGCTCTTCAATTATTCAATGGCAATGAGGAACAAGCAGCTGGATTTCTTTTTGGATGA 1236 0.4037 MKITVMTSDEQILSLDVDPHESVENVKALLEVETSVPLQQQQILFNGNEVSNSQKLSALGVKDDDLLMMTVSSGGAGGAASSGSTNDLSFNTDGSAINPGAFQQHFRRDSNLMGQLFQNDPELAQVILGNDLNKLQEILRLRHRQRDQLRRQKEEEMALLYADPFDVEAQKKIEAAIRQKGIDENWEAALEHNPEGFARVVMLYVDMEVNGVPMKAFVDSGAQSTIISKTCAERLGLLRLLDQRYKGVAHGVGQTEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRYLDEEKYAKEASGSGSPRPVASGSNPSQAGASSGGASGDKSTDSVFESKVAKLVELGFDRQAVIQALQLFNGNEEQAAGFLFG 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01006 411 CDD UBA_scDdi1_like 375 410 - -
Tsu03g01006 411 CDD RP_DDI 187 310 IPR019103 GO:0004190|GO:0006508
Tsu03g01006 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 372 411 IPR015940 -
Tsu03g01006 411 SMART uba_6 374 411 IPR015940 -
Tsu03g01006 411 CDD Ubl_Ddi1_like 1 71 IPR033882 -
Tsu03g01006 411 Pfam Aspartyl protease 180 302 IPR019103 GO:0004190|GO:0006508
Tsu03g01006 411 Gene3D Acid Proteases 181 327 IPR021109 -
Tsu03g01006 411 SUPERFAMILY UBA-like 355 411 IPR009060 GO:0005515
Tsu03g01006 411 MobiDBLite consensus disorder prediction 336 368 - -
Tsu03g01006 411 Coils Coil 132 155 - -
Tsu03g01006 411 Pfam Ubiquitin family 3 72 IPR000626 GO:0005515
Tsu03g01006 411 MobiDBLite consensus disorder prediction 345 368 - -
Tsu03g01006 411 SMART ubq_7 1 72 IPR000626 GO:0005515
Tsu03g01006 411 SUPERFAMILY Acid proteases 187 303 IPR021109 -
Tsu03g01006 411 SUPERFAMILY Ubiquitin-like 1 83 IPR029071 -
Tsu03g01006 411 PANTHER AT13091P 1 410 - -
Tsu03g01006 411 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 410 - -
Tsu03g01006 411 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Tsu03g01006 411 Pfam UBA/TS-N domain 375 408 IPR015940 -
Tsu03g01006 411 Gene3D - 371 410 - -
Tsu03g01006 411 Gene3D - 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01006 Tsu-Chr3 9341124 9347388 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01006 K11885 - gmx:100779464 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01006 03 9341124 9347388 Tsu03g01006 03 9341124 9347388 ECH