Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01005 ATGGCTGCTCCAAATCAATCACCATCACCAACACCTTTCGATATGCACTCTTTTTTCAATCCCccaaaccctaaccctaaccctaatctTTCTTCTCCATTCCCTCCTTCTGCTCCTTCTCCACCACcgtcttcttcttcctcttacCCTCCTCCCACCGGTCCATTCCCTCCTCAACCTTTCCCAATCCACCAAAACAATAACTACCCCTACGATCATCACCAAAACCATTTCCCAATTCACCACCGTTCAATTTCATTCCCTACTCCACCTCTTCAACCTCAACCTATTCCTCCACCTTCAAATCCCAATCCCAACGCCGGTGCTCGTCTCATGGCTCTTCTCAGCGGCCCTCAACcaacacaacaacaaccacaacaacaaccgCAACCTGTCTCTGTTAATTCGCCTTTGCCGCTTGCCACTCCCTCCGCTGCTGCCATTACGGCCGCCAATGCTGCTGCGGCTGCTTCCTCCGCTGCTGCCATTACAGCCGCGAATGCTGCTGAGGCTGCTGAGGCTGCTTTGATTCGGCTTCCAAGTAGTAAGGTTCCTAAGGGAAGACATTTGATTGGGGACCATGTTGTGTATGATTTGGATGTTAGGTTGCCTGGTGAAGTTAAGCCTCAGCTTGAAGTTGCTCCGATTACGAAATATGGTTCGGATCCTAATCCGGTTTTGGGTCGACAGATTGCTGTGAATAAGTCTTATATATGTTATGGGTTGAAACAGGGGAATATTAGGGTGCTTAATATTCATACTGCAGTTAGATCTTTGCTTAGAGGACACACTCAGAGGGTCACAGACTTGGCATTCTTTGCTGAAGATGTTCATTTGCTGGCTAGTGTTGGCACCGATGGCCGCGTCTTTGTGTGGAAAATTTCTGAAGGTCCTAATGATGAAGATAAGCCTCAAATTACTGCTAATATTGTTATTGCTATTCAAATAGTAGGAGGGGAGAAAGTTGAACATCCTCAAATTTGCTGGCACTGCCACAAACAAGAGATTTTGATAGTTGGTATGGGAAGACATGTTCTGAGAATTGACACCACAAAAGTTGGAAATGGTGAAGCCTTTGTGGCAGAAGATCCTCCAAAATGTCCTCTTGACAAGCTCATTGATGGGGTTCAGATTGTAGGAACACATGATGGCGAAGTCACTGATTTGTCAATGTGCCAATGGATGACAAATCGATTGGTATCTGCATCACAGGATGGCACgATAAAAATATGGGAGGATCGGAAGACAAAGCCACTTGCTATTTTGAGACCACATGATGGGCATCCTGTTTTTTCTGCTACTTTTTTTACTTCTCCCCACCAGCCTGGTCATATTGTCCTTATCACAGCGGGACCACAAAACCGGGAAGTGAAGCTCTGGGTCTCAACAAGTAAAGAAGGTTGGCTGCTCCCAAGTGATACCGAATCCTGGCAATGCACTCAGACATTGGAGTTGAATAGTTCAGCTAAGCCGACTCAAAAGGATGCATTCTTTAATCAAGTTGCAGCATTGCCTCATGCCGGATTGCTTTTACTTGCAAATGCCCAGAGGAATGCTATATATGCTGTGCACTTAGAATATGGTCCTAATCCTGAATCAACTCGCATGGATTATTTAGCTGAGTTTACTGTGACAATGCCCATTCTTAGTTTCACTGGAACAAGTGATATTTTGCCTCATGGCGAACATATTGTTCAGGTTTATTGTGTTCAGACACTGGCTATTCAGCAGTATGCTTTGGATTTAGCACAATGTTTGCCTCCACCATCGGAAAATGTGGGACTAGATAAGTCAGATTCCAGTGTTTCCCGAGATGTAATTACTGCTGAAGGATTCACCTCTTTAGAATCGTCCGCAGGTAGAACATCTGAGATATCTTTACCCAATTCTGCTCCCAAGACAATGATGCAAGTAAGTAGCACTGATAGTGGTCTTGTGGCAAGATACCCTTTAAGTTCGGGTCATATTGAGGCACCTATTTCTAGAGAAATCAGCAGTTCAAATATTGAAGCTAAAACTGTTACATTGGCTCCTTGCAGTAGTGATGCTGATATTGTTTGTGTTCCTTCTCCACCTCTTCCTTTGAGCCCAAGGTTGTCCAGGAAGCTTTCTGATTTCAGGAGTCCGCAATCTAACTTGAGTGATCATGTTGGGGACCAAGCTGTTAATGATTATTCAGTTGAGAGACAAATGGATACCATTCACAGGAACTTGTCCGACAAATTGAACAGTGattcaaagaatgatgaaaagaaaatcaaacagGATGATATTTCTAGTGTACTTAACCCTTCTGTCATGTTTAAGCAACCAACTCATCTGGTTACACCATCCGAGATAACAAAAGCCAGTTCCTCCTCTGAGACTAATATGATCGATAGAATGAGTGAGGTAGAAACAAAGATCCAGGATGTGGTTGATGTGGGTAATGCCGAAGTAGAAGTGAAAGTGGTAGGTGAGGCAAGGCCTTATCAAAATGATGAATTTGGAAGGCAGGGGAAACAACAAAACCCTGTTTCTGACGGCAAAGAAAAATTCTTTTGCTCTCAGGCTTCTGATCTTGGCATTGAGATGGCCCGAGAATGTGGTGCAATAGGTGGGGAGACTTACATTACAGAGCAAACTGGACACATTGATTCTACTGGAGGGGACTTGCTGGCCCAGCCTTCTAATGCAGGTGAGGATGGACTCCAAGACTTGCCAAAAGATGTACATGAAAAGGTTTCTGACTCATCTACATCAATGGTAGTACCACCGTCACCTGCACCTAATGTAAAAGGGAAGAGACAAAAGGGTAAAAATTCTCAACCATCAGGTCCGTCTTCCCCATCTCCAAGTGTATGCAATTCAACTGATTCGTCCATTGAACCAAATGGAATTTCAAACCTTCCATCTACAGAAAATGGTTTGCCTCAAATTATGGCAATGCAAGACTCAATCAATCAGTTATTGACAATGCACAAGGAGATGCAGAAACAAATGACAATGATGGTTGCAGCTCCAGTTACAAAAGAGGGTAGAAGGCTTGAGGCTGCCTTAGGGAAAAGCATGGAAAAAGCTGTCAAGTCCAATGCTGATGCTCTGTGGGCTAGAATGCTAGAGGAGAAtgcaaaaaatgaaaagttgttGCGAGATCGTATCCAACATGTTACAGGTTTGATTACTAACTTCATGAACAAGGATCTACCGTCAATATTAGAGAAAACTGTAAAGAAGGAAATGGGTTCAGTTGGGCAAGCTGTAATTCGTTCAATGTCTCCTGCTATTGAGAAAATAATATCCTCTACTATAGTGGAAACCTTCCAGAGAGGAGTGGGCGACAAGGCAGTGAACCAACTTGATAAGTCAGTTAATTCAAAACTCGAAGCTACTGTAGCTAGGCAAATCCAAGCACAGTTTCAGACAACTGCCAAACAGGCGCTTCAGGATGCACTCAAGTCCAGTTTTGAAACAACAGTGGTTCCTGCATTTGAGATGTCCTGCAAAGCCATGTTTGAGCAAGTGGATTCTACATTCCAGAAAGGCATGGCTGAACATTCAAATGCAGTGCAGCAACGCCTTGAATCGGGTCCTACTTCATTGGCAATGACACTAAGGGATTCCATTAATTCAGCATCATCAGTTACTCAAACCTTGAGTAGAGAAGTGCTTGAGGGTCAGAGAAAGATAGTGGCACTTGCAACCTCAAGAACAAACTCAGGCACATTGAGTACTCTGCCCATCCAGCTGAACAACGGTCCTTTACTTCATGAAAAGGTTGAGGCACCACTAGATCCCACAAAGGAGCTAGCAAGGCTGATTTCTGAACGGAAATATGAGGAGGCATTTATTGCTGCACTGCATAGAAGTGATGTATCTATTGTATCTTGGTTATGTTCTCAGGTTGATTTACACGGACTTATGTCAATGGTTCCTCTTCCCTTAAGCCAAGGTGTAGTGCTTTCACTTTTGCAGCAGTTGGCATGTGATATCAACAATGACATGTCCCGGAAGATAGTGTGGATGACAGATGTGTCTACTGCCATAAATCCCTCAGATCCCATGATAACAATGCATGTCCGACCCATCTTTGAGCAAGTCTATCAGATACTGAATCATCAACGTAGCTTGCCTTCAATCTCCGGAGCCGATCTTTCAAATATCCGTCTTTTATTGCATGTCATCAACTCTATGCTTACGACATGTAAATGA 4191 0.4259 MAAPNQSPSPTPFDMHSFFNPPNPNPNPNLSSPFPPSAPSPPPSSSSSYPPPTGPFPPQPFPIHQNNNYPYDHHQNHFPIHHRSISFPTPPLQPQPIPPPSNPNPNAGARLMALLSGPQPTQQQPQQQPQPVSVNSPLPLATPSAAAITAANAAAAASSAAAITAANAAEAAEAALIRLPSSKVPKGRHLIGDHVVYDLDVRLPGEVKPQLEVAPITKYGSDPNPVLGRQIAVNKSYICYGLKQGNIRVLNIHTAVRSLLRGHTQRVTDLAFFAEDVHLLASVGTDGRVFVWKISEGPNDEDKPQITANIVIAIQIVGGEKVEHPQICWHCHKQEILIVGMGRHVLRIDTTKVGNGEAFVAEDPPKCPLDKLIDGVQIVGTHDGEVTDLSMCQWMTNRLVSASQDGTIKIWEDRKTKPLAILRPHDGHPVFSATFFTSPHQPGHIVLITAGPQNREVKLWVSTSKEGWLLPSDTESWQCTQTLELNSSAKPTQKDAFFNQVAALPHAGLLLLANAQRNAIYAVHLEYGPNPESTRMDYLAEFTVTMPILSFTGTSDILPHGEHIVQVYCVQTLAIQQYALDLAQCLPPPSENVGLDKSDSSVSRDVITAEGFTSLESSAGRTSEISLPNSAPKTMMQVSSTDSGLVARYPLSSGHIEAPISREISSSNIEAKTVTLAPCSSDADIVCVPSPPLPLSPRLSRKLSDFRSPQSNLSDHVGDQAVNDYSVERQMDTIHRNLSDKLNSDSKNDEKKIKQDDISSVLNPSVMFKQPTHLVTPSEITKASSSSETNMIDRMSEVETKIQDVVDVGNAEVEVKVVGEARPYQNDEFGRQGKQQNPVSDGKEKFFCSQASDLGIEMARECGAIGGETYITEQTGHIDSTGGDLLAQPSNAGEDGLQDLPKDVHEKVSDSSTSMVVPPSPAPNVKGKRQKGKNSQPSGPSSPSPSVCNSTDSSIEPNGISNLPSTENGLPQIMAMQDSINQLLTMHKEMQKQMTMMVAAPVTKEGRRLEAALGKSMEKAVKSNADALWARMLEENAKNEKLLRDRIQHVTGLITNFMNKDLPSILEKTVKKEMGSVGQAVIRSMSPAIEKIISSTIVETFQRGVGDKAVNQLDKSVNSKLEATVARQIQAQFQTTAKQALQDALKSSFETTVVPAFEMSCKAMFEQVDSTFQKGMAEHSNAVQQRLESGPTSLAMTLRDSINSASSVTQTLSREVLEGQRKIVALATSRTNSGTLSTLPIQLNNGPLLHEKVEAPLDPTKELARLISERKYEEAFIAALHRSDVSIVSWLCSQVDLHGLMSMVPLPLSQGVVLSLLQQLACDINNDMSRKIVWMTDVSTAINPSDPMITMHVRPIFEQVYQILNHQRSLPSISGADLSNIRLLLHVINSMLTTCK 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01005 1396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 297 - -
Tsu03g01005 1396 Gene3D - 1308 1396 IPR044938 -
Tsu03g01005 1396 MobiDBLite consensus disorder prediction 875 969 - -
Tsu03g01005 1396 MobiDBLite consensus disorder prediction 703 719 - -
Tsu03g01005 1396 Gene3D - 215 560 IPR015943 GO:0005515
Tsu03g01005 1396 MobiDBLite consensus disorder prediction 1 138 - -
Tsu03g01005 1396 SMART WD40_4 415 461 IPR001680 GO:0005515
Tsu03g01005 1396 SMART WD40_4 253 293 IPR001680 GO:0005515
Tsu03g01005 1396 SMART WD40_4 375 412 IPR001680 GO:0005515
Tsu03g01005 1396 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 22 1396 - -
Tsu03g01005 1396 MobiDBLite consensus disorder prediction 929 969 - -
Tsu03g01005 1396 ProSiteProfiles Trp-Asp (WD) repeats profile. 379 421 IPR001680 GO:0005515
Tsu03g01005 1396 MobiDBLite consensus disorder prediction 697 721 - -
Tsu03g01005 1396 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 22 1396 IPR045152 GO:0031087
Tsu03g01005 1396 MobiDBLite consensus disorder prediction 116 138 - -
Tsu03g01005 1396 SUPERFAMILY WD40 repeat-like 226 524 IPR036322 GO:0005515
Tsu03g01005 1396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 379 412 - -
Tsu03g01005 1396 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 302 IPR001680 GO:0005515
Tsu03g01005 1396 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 213 329 IPR032401 -
Tsu03g01005 1396 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 385 525 IPR032401 -
Tsu03g01005 1396 MobiDBLite consensus disorder prediction 15 64 - -
Tsu03g01005 1396 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01005 Tsu-Chr3 9326385 9335607 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01005 K12616 - gmx:100802374 2060.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01005 03 9326385 9335607 Tsu03g01005 03 9326385 9335607 ECH