Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00652 atgtttctatttttcatcttctttttcttcttcatcaaccCTTCTCAACAAACAACTTCTTCACTCTCACTCTCTTTCCCTTTAACATCACTCTCTCTCGCAAAAAACACAACCTCAAAAATGCTATACACATCTCAACTATTTTCATCATCTTTTAAGAAACCAAACAAcaacacacaaaacaaaacaacggTACCTTCTTATAACTAcaaattttctttcaaatattCAATGGCTCTCATAGTTAATCTTCCCATTGGAACACCACCTCAAACCCAACAAATGGTGTTGGATACAGGTAGCCAACTTTCATGGATTCAATGTCACAAAAAACAACCTCCAACGGCGTCGTTtgatccttctctctcttcAACTTTCTCTATTCTTCCGTGTACTCATCCTCTTTGTAAACCACGAATTCCCGATTTTACCCTCCCAACTTCTTGTGACCAAAACCGTCTCTGCCATTACTCCTACTTTTACGCTGACGGTACTTACGCCGAGGGTAATCTCGCCAGagaaaaattcacattttctcGTTCCGTTTCTACCCCTCCTTTAATCCTCGGTTGCGCTACAGAATCTACTGACCCCAGGGGTATTTTAGGAATGAATCTCGGACGGTTATCCTTCGCTCATCAATCCAAAATTACTAAATTCTCGTACTGTGTACCCACTCGCCAAACTCAAACACAAAACCGACCCGGTTTAGCTCCAACCGGATCTTTTTACCTTGGTAACAACCCGAATTCGAAATGGTTCAAGTACGTCGGAATGGTGAATTTTTCTCCACGTCAACGCATGCCGAATCTTGACCCATTAGCTTACACTATCCCTATGCAAGGAATAAGAATCGCCGgcaagaaattaaatatttcgCCGGCGGTTTTTCGCGCTGATGCTGGTGGGTCGGGTCAAACCATGATTGACTCAGGATCCGAGTTCAGTTATTTTGTTGGCGAAGTTTATGATAAAGTGCGGGAAGTAGTGGTTAAAGCTGTGGGTCCCAGAATTAAGAATGGTTACGTGTACGGTGGAATAGCTGACATGTGTTTTGATAGTAAAAATGCTGTTGAGATCGGACGGTTGATAGGTGAGATGGTTTTTGAATTTGAGAAAGGTGTTGAGATTGTGATTCCAAAGGAAAGAATACTTGCTGACGTGGGTGGTGGGGTCCACTGTGTTGGAATTGGAAATTCAGATAAATTAGGTGCGGCGAGTAACATTATTGGGAATTTTCATCAACAAAATCTATGGGTGGAATTTGATCTGGTGAATCGTAGGGTGGGATTTGGTAAGGATGATTGTAGCAGATTAGGGAAGTGA 1326 0.3846 MFLFFIFFFFFINPSQQTTSSLSLSFPLTSLSLAKNTTSKMLYTSQLFSSSFKKPNNNTQNKTTVPSYNYKFSFKYSMALIVNLPIGTPPQTQQMVLDTGSQLSWIQCHKKQPPTASFDPSLSSTFSILPCTHPLCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLAREKFTFSRSVSTPPLILGCATESTDPRGILGMNLGRLSFAHQSKITKFSYCVPTRQTQTQNRPGLAPTGSFYLGNNPNSKWFKYVGMVNFSPRQRMPNLDPLAYTIPMQGIRIAGKKLNISPAVFRADAGGSGQTMIDSGSEFSYFVGEVYDKVREVVVKAVGPRIKNGYVYGGIADMCFDSKNAVEIGRLIGEMVFEFEKGVEIVIPKERILADVGGGVHCVGIGNSDKLGAASNIIGNFHQQNLWVEFDLVNRRVGFGKDDCSRLGK 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00652 441 Pfam Xylanase inhibitor C-terminal 275 432 IPR032799 -
Tsu03g00652 441 SUPERFAMILY Acid proteases 81 439 IPR021109 -
Tsu03g00652 441 Pfam Xylanase inhibitor N-terminal 81 230 IPR032861 -
Tsu03g00652 441 Gene3D Acid Proteases 51 236 IPR021109 -
Tsu03g00652 441 ProSiteProfiles Peptidase family A1 domain profile. 80 432 IPR033121 -
Tsu03g00652 441 Gene3D Acid Proteases 242 440 IPR021109 -
Tsu03g00652 441 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 1 441 - -
Tsu03g00652 441 CDD pepsin_A_like_plant 81 436 IPR034161 -
Tsu03g00652 441 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 95 106 IPR001969 GO:0004190|GO:0006508
Tsu03g00652 441 PANTHER ASPARTYL PROTEASE-RELATED 1 441 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00652 Tsu-Chr3 5732647 5734386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00652 82 441 Miscellaneous Gene Families AT1G44130 23.192 7.63e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00652 - - gmx:100803089 674.855