Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00642 ATGGTTATGCATTTTCTTCTTCTGCTTCTTTTTGCAGGGTCTCTTGTTGCAGCTGATGAAGAACCATTTATTGGAGTGAACATTGGTACAGATCTCTCGGACATGCCTCACCCTACTCAAACAGTTGCATTGCTCAAAGCTCAACAAATTCGACATATTCGATTATATAATGCAGATCAAGGAATGCTTACTGCACTATCAAAATCAGGAATTCAAGTTGCAATCTCTGTCCCTAATGAAGAGCTTCTAGCCATAGGCCAATCGAATTCCACAGCTTTAAATTGGGTTTCTCGCAATGTGTTAGCATATTATCCATCCACAAATATCACATCTATTTGTGTTGGTTCTGAGGTTTTAACCACACTCCCAAATGCAGCAAAACTCCTAATCAACGCACTTAAATACATTCATTCAGCCCTTGTCGCATCAAAACTCGATTCCAAAATCAAAGTCTCGACACCACTTCCTTCTACTATCATACTTGATTCATTTCCACCTTCACAGGCCTTTTTCAACACCTCAATGAATCAAGTCTTGATTCCAATGCTTGATTTCTTGCAATCCACTCAATCTTATCTCATGCTTAATATTTATCCTTACTTTGATTACATGGAATCAAATGGCTTTATCCCTTTGGATTATGCACTTTTCAAACCACTTCCACCAAACAAAGAATCTATTGATTCTAACACACTTCTTCATTATTCCAATGTGTTTGATGCTGTTGTTGACGCAGCGTATTTTGCAATGTCCTATCTTAATTACACCAACATTCCTGTCATTGTGACCGAAACCGGTTGGCCTTCGAAAGGTAGTTCTAATGAACCTGATGCAACACTAGACAATGCTAATACTTACAACAGCAATTTGATCAAGCATGTGTTGAATAAAACCGGAACGCCGAAAAATCCTGGAATCGCTGTTAGTACTTATATCTACGAGCTCTACAATGAGGACACAAAGCCAGGGGCATTGTCAGAAAAAAATTGGGGACTATTTGATTCAAATGGTGTACCTGTTTATGTTTTACAATTGACAGGTTCAGGGGCAGTTTTGGCAAATGATACAAATGGTGAAACTTATTGTGTTGCTAAAGATGGTGCTGATCCAAAAATGTTACAAGCTGGAATTGATTGGGCTTGTGGACCTGGAAAAGTGGATTGTTCACCATTGTTGCAAGGACAACCATGTTATGATCCTGATAATGTTGTTGCACATGCTAattatgcttttgatgcttatTATCATCAGATGGGAAAATCTACTAAGGCTTGTGATTTCAATGATATGGCTACAATCTCCACTTCAAATCCAAGTCATGGTTCTTGTATATTTGCAGGAAgTCTTGGAAGAAATGGTAACGCCCCTGAACCATCACCCAATTTCATGAATTCACAATCTTCTGCATGTGAATTGAGAATTAGAAGCATTCTTATTGTGATAGGACTTCTAATATGGGGAGTGGTTTTGCTATAA 1476 0.3787 MVMHFLLLLLFAGSLVAADEEPFIGVNIGTDLSDMPHPTQTVALLKAQQIRHIRLYNADQGMLTALSKSGIQVAISVPNEELLAIGQSNSTALNWVSRNVLAYYPSTNITSICVGSEVLTTLPNAAKLLINALKYIHSALVASKLDSKIKVSTPLPSTIILDSFPPSQAFFNTSMNQVLIPMLDFLQSTQSYLMLNIYPYFDYMESNGFIPLDYALFKPLPPNKESIDSNTLLHYSNVFDAVVDAAYFAMSYLNYTNIPVIVTETGWPSKGSSNEPDATLDNANTYNSNLIKHVLNKTGTPKNPGIAVSTYIYELYNEDTKPGALSEKNWGLFDSNGVPVYVLQLTGSGAVLANDTNGETYCVAKDGADPKMLQAGIDWACGPGKVDCSPLLQGQPCYDPDNVVAHANYAFDAYYHQMGKSTKACDFNDMATISTSNPSHGSCIFAGSLGRNGNAPEPSPNFMNSQSSACELRIRSILIVIGLLIWGVVLL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00642 491 Gene3D - 355 448 - -
Tsu03g00642 491 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 7 471 - -
Tsu03g00642 491 SUPERFAMILY (Trans)glycosidases 24 343 IPR017853 -
Tsu03g00642 491 Pfam Glycosyl hydrolases family 17 24 344 IPR000490 GO:0004553|GO:0005975
Tsu03g00642 491 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Tsu03g00642 491 Pfam X8 domain 361 432 IPR012946 -
Tsu03g00642 491 Gene3D Glycosidases 23 349 - -
Tsu03g00642 491 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 7 471 IPR044965 GO:0004553|GO:0005975
Tsu03g00642 491 SMART X8_cls 360 445 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00642 Tsu-Chr3 5600182 5604194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00642 18 488 Glycoside Hydrolase AT1G66250 68.973 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00642 K19891 - gmx:100799965 793.497