Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00641 ATGTCACTTTCATGTGGGGTCGAGTGCATTTTCGTCTTCGGCTGTGCACGTTGGCTATGGAAACGTTGCACATACATCGGCTCTTACGATAGTGCCACGTGGCCATCTGCCACCGCCGTCGAATTCGAATCAGTGCCACGTGTCTGTAGACTCATCCTCGCTATCTATGAACCCGATCTTCATAATCCACAAAACTATATACCTGCTAATGGGTATCGTTTAAATCCTGATTGGGTTATAAAGCGCGTGACTTATGAACAAACTCAAGGTCACGCGCCGCCGTATATAATCTACGTTGATCATGATCATCGCGAGATTGTTATGGCGGTGCGTGGTTTGAATTTAGCTAAAGAAAGTGATTATAAGACTTTGTTGGATAATAAATTAGGACAACAAATGTTTGATGGTGGTTATGTTCATCATGGGTTGTTGAAATCTGCTGTTTGGTTGTTGAATAGGGAATCTGAGACATTGAAGAGTTTGTGGATTGAGAATGGTTCTGATTATGGGATGGTTTTTGCTGGACATTCTTTAGGGAGTGGTGTTGTTTCTTTGTTGAGTATTCTTGTTGTGAATCATAGGGAACGTTTGGGTGGGATTTCTAAAGAGAAAATTAGGTGTTATGCTATTGCTCCTGCGAGATGTATGTCGCTTAATTTGGCTGTTAAATATGCTAATGTTATTCATTCCATTATTTTGCAGGATGATTTCTTGCCAAGAACGGCAACTCCATTGGAAGATATATTCAAATCAATATTCTGCTTGCCCTGCTTATTATTCTTGGTTTGCTTGAGGGACACCTTCATACCCGAGGATCGAAAGCTGAGAGATCCAAGGAGACTTTACGCACCTGGACGAATGTACCATATTGTTGAAAGGAAATTTTGTAGATGTGGGAGATTTCCTCCTGAAGTGAGGACGGCTATTCCTGTTGATGGAAGATTTGAGCATATTGTCTTGTCTTGCAACACAACAGCAGATCATGCAATTATTTGGATTGAAAGGGAAGCAGAGAAAGCCTTGCAATTAATGAAGGATCAAGAAAGCTCCAAAACCGTGACAGTCGCTCCAACAATACAAAAATTTGAGAGATTGAAAACCCTAGAAAAAGAACATAAAGATGCTTTGGAAAGAGCTGTTAGCTTAAATGTACCTCATGCAGTAGACAGTGCAGAGGAAGAACCACTTGAAAACAATGGTGAGGGATCCGGTATTAATGGCGACAAAGAAGCCTCCTCAAGTACCGAAACAAAACCAAGTGGTGGAAGATTAAACTGGGAAGAGGTTGTCGAAAAGCTGTTGAAGAAGAATGAAACCGGAGAAAAACACATTGAAGATGATACAAATGTCTCACATTga 1359 0.4091 MSLSCGVECIFVFGCARWLWKRCTYIGSYDSATWPSATAVEFESVPRVCRLILAIYEPDLHNPQNYIPANGYRLNPDWVIKRVTYEQTQGHAPPYIIYVDHDHREIVMAVRGLNLAKESDYKTLLDNKLGQQMFDGGYVHHGLLKSAVWLLNRESETLKSLWIENGSDYGMVFAGHSLGSGVVSLLSILVVNHRERLGGISKEKIRCYAIAPARCMSLNLAVKYANVIHSIILQDDFLPRTATPLEDIFKSIFCLPCLLFLVCLRDTFIPEDRKLRDPRRLYAPGRMYHIVERKFCRCGRFPPEVRTAIPVDGRFEHIVLSCNTTADHAIIWIEREAEKALQLMKDQESSKTVTVAPTIQKFERLKTLEKEHKDALERAVSLNVPHAVDSAEEEPLENNGEGSGINGDKEASSSTETKPSGGRLNWEEVVEKLLKKNETGEKHIEDDTNVSH 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00641 452 CDD Lipase_3 41 240 - -
Tsu03g00641 452 Pfam Lipase (class 3) 107 242 IPR002921 GO:0006629
Tsu03g00641 452 MobiDBLite consensus disorder prediction 428 452 - -
Tsu03g00641 452 MobiDBLite consensus disorder prediction 405 421 - -
Tsu03g00641 452 Pfam Lipase 3 N-terminal region 7 64 IPR005592 GO:0016042
Tsu03g00641 452 Gene3D alpha/beta hydrolase 34 252 IPR029058 -
Tsu03g00641 452 SUPERFAMILY alpha/beta-Hydrolases 38 243 IPR029058 -
Tsu03g00641 452 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 449 - -
Tsu03g00641 452 MobiDBLite consensus disorder prediction 384 452 - -
Tsu03g00641 452 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00641 Tsu-Chr3 5595054 5598650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00641 1 343 Miscellaneous Gene Families AT5G37710 75.510 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00641 - - gmx:100798831 726.857