Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00639 ATGGCTACTGCAGGGGTTATTAATAAATCTTTTTCCATTCCTCCATACCCTGAGATGATTTTGAAGGCAATAGAAGAATTAAACGAAGAAAATGGTTCAAACAAATCCTCGATATCCAAGTACATAGAATCCACATACGGTGGCTTGCCTCAAGGACATAAAGCACTGCTCAACTTGCACCTTGCAAGAATGAGGGACAGTGGCGAGCTTGTATTTTGGAAAAACAATTACACCAAGCGTGACCCAGATGCTCCACCGAGAAGGGGCCGCGGAAGGCCACCAAAGCCCAAAGAATCTTTTTCTCTAGGTGTCGTCTACTCACCGCCCAAACCTAAAGGCCGTCCGCCAAAGGATCCAAATGATCCACCAAAGTCACCAAAAGTTAAGGCCTCAACTGGGAGCGGAAGGCCTAGAGGTCGGCCAAGGAAGATGTCTCAGCCGACTAGAGGATTTGACGGAGCATTGGCTTCGGATGTAGGGACCGGCGGTAGTGGGAGGCCTAGGGGTAGGCCTCCAAAGATGAAGTCCACACCATTGACTGAAATTAGTGCTTAA 555 0.4829 MATAGVINKSFSIPPYPEMILKAIEELNEENGSNKSSISKYIESTYGGLPQGHKALLNLHLARMRDSGELVFWKNNYTKRDPDAPPRRGRGRPPKPKESFSLGVVYSPPKPKGRPPKDPNDPPKSPKVKASTGSGRPRGRPRKMSQPTRGFDGALASDVGTGGSGRPRGRPPKMKSTPLTEISA 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00639 184 MobiDBLite consensus disorder prediction 75 184 - -
Tsu03g00639 184 PRINTS High mobility group protein (HMGY) signature 85 97 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Tsu03g00639 184 PRINTS High mobility group protein (HMGY) signature 111 122 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Tsu03g00639 184 PRINTS High mobility group protein (HMGY) signature 124 143 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Tsu03g00639 184 MobiDBLite consensus disorder prediction 80 95 - -
Tsu03g00639 184 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu03g00639 184 Gene3D - 9 90 IPR036388 -
Tsu03g00639 184 PANTHER HMG-Y-RELATED PROTEIN A 1 176 IPR031059 GO:0003677|GO:0005634
Tsu03g00639 184 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Tsu03g00639 184 SMART AT_hook_2 165 177 IPR017956 GO:0003677
Tsu03g00639 184 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Tsu03g00639 184 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Tsu03g00639 184 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Tsu03g00639 184 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Tsu03g00639 184 PRINTS AT-hook-like domain signature 133 143 IPR017956 GO:0003677
Tsu03g00639 184 PANTHER HISTONE H1 1 176 - -
Tsu03g00639 184 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu03g00639 184 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu03g00639 184 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00639 Tsu-Chr3 5583631 5585483 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00639 - - gmx:100803968 217.624