Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00609 ATGAAGAGTGGAGAACTGTGCAAAATAAATGAGGAACAAAGGAAGACCATTGCTCAACTTGAAAAGGAAAAGCAAATACACTTGTCCACCATAGCTAATCTTCAGAGTGAAACAAGCATGTTAAAGTCCCAATTTGAGAGTGTGGACAAACAACTCAGATTGCTAAACAATGGTACCGACAGGTTAGATGGGATActggaagaaaataaaaagaccaAGCAAGGCAAAGGATTAGGCTATCATCCTAcaaagaaacaagcctctgGACCAGTCAAGAAGTTTGCTCCAACCAACCTTTGGTTTGGAACTAGAAAGCAGGGTCATATGTCTCAACATTCAGCACCCCACCAGAGAAGGTCTAGGAAGTGCCAACATGCTGGACCATATCAAcgacctccaagGGTATATGGGATCGTTAAAAAGTGCCCTTACCTCGGCAAGCTTCCAAAACGTACAACTTACGCTACGCAAGCACAATCCGTCTCACTCGACAAAGTTCCCAATCCGGGAATTAGGTTTTTTGGGGTTGCGCTTGATGAGTGTGCTAGGTTTCATGATTTAAGGAGGGCTAAGTTTTTTCGGGAGGTTATATTGGGGAAAACTAAGTTGCAGCCGACAACTGCAATGTATAATTCGATAATTGCTTTGTATTGTTATCATGGTGATATTGATGCTGCTATGAAGATGTTTGATGGGAGGGTTCACACAGAGGCTTTTCCGGATTCACTTACATATAATTTGTTGTTTAGGTATTTGATTAAAGGTAGCAAATTGTTGAAGGCTACAAGGATGTTTATTGAGATTGTGAAAAATGAATGTGTGCAGAATCAACTTAATTGTGATGCGGCAGTTAGGGTTTATTTAGATAATGGATATCCTTCTATGGCTATCTAA 894 0.3814 MKSGELCKINEEQRKTIAQLEKEKQIHLSTIANLQSETSMLKSQFESVDKQLRLLNNGTDRLDGILEENKKTKQGKGLGYHPTKKQASGPVKKFAPTNLWFGTRKQGHMSQHSAPHQRRSRKCQHAGPYQRPPRVYGIVKKCPYLGKLPKRTTYATQAQSVSLDKVPNPGIRFFGVALDECARFHDLRRAKFFREVILGKTKLQPTTAMYNSIIALYCYHGDIDAAMKMFDGRVHTEAFPDSLTYNLLFRYLIKGSKLLKATRMFIEIVKNECVQNQLNCDAAVRVYLDNGYPSMAI 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00609 297 MobiDBLite consensus disorder prediction 111 125 - -
Tsu03g00609 297 Pfam PPR repeat family 205 252 IPR002885 -
Tsu03g00609 297 TIGRFAM PPR: pentatricopeptide repeat domain 209 231 IPR002885 -
Tsu03g00609 297 Gene3D Tetratricopeptide repeat domain 153 295 IPR011990 GO:0005515
Tsu03g00609 297 Coils Coil 10 37 - -
Tsu03g00609 297 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 164 297 - -
Tsu03g00609 297 MobiDBLite consensus disorder prediction 108 128 - -
Tsu03g00609 297 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Tsu03g00609 297 PANTHER OS02G0711100 PROTEIN 164 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00609 Tsu-Chr3 5291622 5300763 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00609 - - aip:107633752 150.599