Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00584 ATGGAGTCACCACAAGCAAGAAAATCTGGGATAAACCTCCCAGCTGGAATGTCCAGCATAGCATCACTACGTCTAGAAACCCTATCAACTCCACCTTCTTCCGCTTCGCCGCGCGCAATCTCAAACCTTTCATCATCACCTTCAAAAACTTCTACATGTAGTGATAGATTCATACCATGTAGATCATCTTCAAGACTTCATACATTCGGCTTAATCGATAAACCATCACCGGTTAAAGAAGGGAGTAATGAAGCTTATTCCAGATTGTTAAAATCTGAGCTTTTTGGATCTGATTTTGCTTCTCCTTCTTCTCCTGCAGGTGGTCCTTCTTCTCCTAGTAAGAATATGTTTCGGTTTAAGACTGATTCTTCTGGACCTTCTTCTCCGTTTTCGCCTTCTCCTTCCATTTTAGGACATTATTCTGGATTCTCTAATGAGTGTTCTACTCCTCCTAAGCCTCCTAGGAAAGTTCCCAAAACACCCAATAAGGTTCTGGATGCCCCTTCACTTCAAGATGACTTTTACTTGAATCTTGTGGACTGGTCCTCACAAAATACTCTAGCAGTGGGACTTGGCACTTGTGTTTATCTATGGAGTGCTTCAAACAGTAAAGTGACTAAGTTGTGTGACTTGGGACCTTATGATGGTGTATGTTCTGTCCAGTGGACCAAGGAGGGTTCTTTCATATCTATTGGTACAAACCTTGGTCAAGTTCAGATTTGGGATGGTACTAAATGCAAGAAGGTTAGAACAATGGCAGGTCATCAAACAAGAACCGGTGTATTGGCATGGAATTCTCGCATTTTGGCTTCAGGGAGTAGGGATAGGAACATACTTCAACATGACATGAGAGTTTCAAGTGACTTTATTGGCAAGCTTGTTGGTCACAAGTCTGAGGTATGTGGATTGAAATGGTCCTGTGATGACAGGGAACTTGCTTCTGGTGGTAATGATAATCAGCTATTGGTATGGAATCAGCATTCTCAGCAACCAACTTTGAGACTCACAGAGCACACTGCTGCTGTGAAAGCCATTGCTTGGTCACCTCATCAAAGCAACCTTCTTGTGTCTGGTGGTGGAACTGCCGATAGATGTATTCGTTTCTGGAACACAACAAATGGCCACCAATTGAACTCTGTTGACACTGGAAGCCAGGTTTGTAACCTTGCTTGGAGTAAAAATGTGAATGAGCTAGTAAGTACTCATGGTTACTCACAAAATCAAATCATGGTGTGGAAATATCCATCACTAGCAAAGgTTGCAACTCTAACTGGCCACAGCATGAGAGTACTATACCTTGCAATGTCTCCTGATGGTCAGACAATAGTGACTGGTGCTGGGGATGAGACTCTGCGGTTTTGGAATGTTTTCCCATCAATGAAAACACCTGCCCCAGTTAAAGATACAGGCTTATGGTCACTGGGCCGCACCCAAATTCGATGA 1443 0.431 MESPQARKSGINLPAGMSSIASLRLETLSTPPSSASPRAISNLSSSPSKTSTCSDRFIPCRSSSRLHTFGLIDKPSPVKEGSNEAYSRLLKSELFGSDFASPSSPAGGPSSPSKNMFRFKTDSSGPSSPFSPSPSILGHYSGFSNECSTPPKPPRKVPKTPNKVLDAPSLQDDFYLNLVDWSSQNTLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTKEGSFISIGTNLGQVQIWDGTKCKKVRTMAGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSSDFIGKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTPAPVKDTGLWSLGRTQIR 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00584 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 334 IPR001680 GO:0005515
Tsu03g00584 480 ProSitePatterns Trp-Asp (WD) repeats signature. 442 456 IPR019775 -
Tsu03g00584 480 MobiDBLite consensus disorder prediction 28 56 - -
Tsu03g00584 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 379 IPR001680 GO:0005515
Tsu03g00584 480 ProSitePatterns Trp-Asp (WD) repeats signature. 357 371 IPR019775 -
Tsu03g00584 480 Gene3D - 128 457 IPR015943 GO:0005515
Tsu03g00584 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 423 456 - -
Tsu03g00584 480 Pfam Eukaryotic translation initiation factor eIF2A 319 454 IPR013979 -
Tsu03g00584 480 SMART WD40_4 202 242 IPR001680 GO:0005515
Tsu03g00584 480 SMART WD40_4 158 199 IPR001680 GO:0005515
Tsu03g00584 480 SMART WD40_4 245 282 IPR001680 GO:0005515
Tsu03g00584 480 SMART WD40_4 416 455 IPR001680 GO:0005515
Tsu03g00584 480 SMART WD40_4 286 325 IPR001680 GO:0005515
Tsu03g00584 480 SMART WD40_4 328 370 IPR001680 GO:0005515
Tsu03g00584 480 SMART WD40_4 373 413 IPR001680 GO:0005515
Tsu03g00584 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 423 456 IPR001680 GO:0005515
Tsu03g00584 480 MobiDBLite consensus disorder prediction 100 132 - -
Tsu03g00584 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 293 325 - -
Tsu03g00584 480 SUPERFAMILY WD40 repeat-like 155 456 IPR036322 GO:0005515
Tsu03g00584 480 PANTHER PROTEIN FIZZY-RELATED 3 9 480 - -
Tsu03g00584 480 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 9 480 IPR033010 GO:0010997|GO:0097027|GO:1904668
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00584 Tsu-Chr3 5056549 5059974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00584 290 456 Miscellaneous Gene Families AT5G08390 20.833 6.15e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00584 K03364 - qsu:112001896 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00584 03 5056549 5059974 Tsu03g00584 03 5056549 5059974 ECH