Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00583 ATGCCTTTCATCTCCAAAATTGACCGCCAATCCGATTACAATCGCTTCAGTTCTTCCACTCCCATCGTTATCGACAATGGCGCTTCTTATTTCCGTATTGGATGGGCTGGTGAAACTGAACCTCGTGTTGTTTTCCGCAACATTGTTCAAAGACCACGACATAAATCCACAGGAGAAACTGTTACCATTGTTGGTGACCATGATCCAGCATTGTTGAAATACTTTGACTGTACTCGCTCTGGACCTCGCTCAGCGTTTGACAGCGATGTTGTTTTCCAGTTTGAAATAATGGAATATATTCTGGACTTCGCATTTGATCGGTTAGGTGCAACAGGATCAGAGATTGATCATCCTATCCTGATCACAGAATGTGTATGCAACCCAGTTCACTCTCGAAGTAAAATGGCCGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGTGTTGATGCAGCATTCAGCTATAAGTATAACCAACAACGAAGTGTTTGTGATAAAGATGGTCTTGCTATGTGTCCTGGATTCGCTACAACCCATGTCATTCCGtTTGTTGACGGAGAACCTATTTATAAAGGAAGTTGTCGTACTAATATTGGTGGATTCCACGTTACTAATTATTTAAAGCAACTTCTTTCACTTAAATATCCGTATCATCTGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATGTTGCACATAACTATGTTTCTGAAGCTCAATTGTTTCAGAAAGGAATGAAGGAGGCtgaagaaaaaaccaaaatgtGGCAGCTCCCTTGGGTGCCACCTCCAGTTGAGGCGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAAAGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCGAAGAGGTCATCAAAAATTAATGAGCTGGAAAATGAATTGCGTGGTTTGGAATTTCTTCTGAATCAACTTGGACATTTTCAAGAGAGTGATATACCATCTTTCTTAGCAGAGACAGGCTATGTCTCTCGGCAGGAAGTAGAATCTGCCCGGAGTAAGGTTGTCCAATCCTTAAGGAAACAAAAAGGTGAACAAGCTGAAAGTGAAAAACCTGATGTTCCATCTAATGAGAAGTATACTCTTATAAACATCCCTGATGACATGCTGACGGCAGAGCAGCttgttgaaaagaagaaacaGTTGTCACTCAAATCTATGTCTGATGGGAGGCAACGACAAAAACAGAAGCGCCAGGAAGAGTTACAGGAAAAAGCGAGGAAAGAACAGCTAGAAGAGGAGAGACGCGAGAAGAACCCGGAGCTTTATTTGGAACAATTGCGTGCCAGATACAAGGACCTTTCGGAGAAAATTGACCAGCGTAAAAGGCTCAAGACAAATGGAGGCTCCTCCACAAATGGAAATGGTTTGGCGGGTAGTGTTGGCCGTGGTGAGAGACTCAATGCTGCTCAAAGGGAGAGAATGCGCCTGCTGACAACTGCTGCCTTTGATCGTGGTAAGGGCGAGGATACATTTGGCGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGTAAAGATAATGATGACGACGACGAGGAACCAGATGAGGATACCACAGAGCTAGCCCGCATCTCTTCGAAGCTCCAGGCCTTGGATCCAAAATTTGTGCCCAAGGTAGAAGCAGGAACCTCCCAACCTGCCGAGGCGTCACGTGTTCGTCCGCTCACCAAAGAAGATTTTCAGATTGTTTTTGGGGTTGAAAGGTTCAGGTGCCCTGAAATTTTGTTCAGTCCAAACTGGATTGGTGTTGATCAAGTTGGATTAGATGAGATGGCCGGGGTGTCAATGAGAAGGTTATCATGTAAAGACGAAAAGCTTGAAGAGAGAATGACTAATTCAATACTTGTGACTGGTGGAAGTTCTCTTTTCCCGGGCATCATTGAACGCCTCGAAGCTGGGATTCGGATGATAAGACCATGTGGTTCGCCTATAAAAATTGTTAGAGCGCTTGATCCGGTTATGGATGCATGGCGTGGCGCGTCTGCTTATGCATCAGCCCCAGGTTTCCACACACAAACATTCTCTAGGATGGATTATTATGAAAAAGGTGAAGACTGGCTTCGTAATTATCAACTTCGATATTCATTGTAA 2160 0.4319 MPFISKIDRQSDYNRFSSSTPIVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKSTGETVTIVGDHDPALLKYFDCTRSGPRSAFDSDVVFQFEIMEYILDFAFDRLGATGSEIDHPILITECVCNPVHSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQRSVCDKDGLAMCPGFATTHVIPFVDGEPIYKGSCRTNIGGFHVTNYLKQLLSLKYPYHLARFTWEKVEDLKMEHCYVAHNYVSEAQLFQKGMKEAEEKTKMWQLPWVPPPVEAPPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELRGLEFLLNQLGHFQESDIPSFLAETGYVSRQEVESARSKVVQSLRKQKGEQAESEKPDVPSNEKYTLINIPDDMLTAEQLVEKKKQLSLKSMSDGRQRQKQKRQEELQEKARKEQLEEERREKNPELYLEQLRARYKDLSEKIDQRKRLKTNGGSSTNGNGLAGSVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDEEPDEDTTELARISSKLQALDPKFVPKVEAGTSQPAEASRVRPLTKEDFQIVFGVERFRCPEILFSPNWIGVDQVGLDEMAGVSMRRLSCKDEKLEERMTNSILVTGGSSLFPGIIERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGASAYASAPGFHTQTFSRMDYYEKGEDWLRNYQLRYSL 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00583 719 MobiDBLite consensus disorder prediction 360 380 - -
Tsu03g00583 719 Gene3D - 18 171 - -
Tsu03g00583 719 Coils Coil 412 440 - -
Tsu03g00583 719 Gene3D Actin; Chain A, domain 4 201 303 - -
Tsu03g00583 719 SUPERFAMILY Actin-like ATPase domain 170 712 IPR043129 -
Tsu03g00583 719 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Tsu03g00583 719 SMART actin_3 19 716 IPR004000 -
Tsu03g00583 719 SUPERFAMILY Actin-like ATPase domain 18 161 IPR043129 -
Tsu03g00583 719 Coils Coil 445 465 - -
Tsu03g00583 719 MobiDBLite consensus disorder prediction 459 484 - -
Tsu03g00583 719 PANTHER ACTIN-RELATED PROTEIN 5 12 711 IPR027664 -
Tsu03g00583 719 MobiDBLite consensus disorder prediction 403 438 - -
Tsu03g00583 719 Gene3D - 585 674 - -
Tsu03g00583 719 MobiDBLite consensus disorder prediction 360 376 - -
Tsu03g00583 719 Pfam Actin 19 268 IPR004000 -
Tsu03g00583 719 Pfam Actin 584 711 IPR004000 -
Tsu03g00583 719 PANTHER ACTIN 12 711 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00583 Tsu-Chr3 5049572 5054529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g00583 585 706 Miscellaneous Gene Families AT2G42100 32.787 8.48e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00583 K11672 - gmx:100808396 1168.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00583 03 5049572 5054529 Tsu03g00583 03 5049572 5054529 ECH