Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g00567 ATGTTGATTCAGATTCCTCGCCTTACAAATTCTCTCAGAGAACCCTTCGATATCGATCAAGCTTATCTTCATCGCAAAACCTTTCTCCAAAATCAAAAGCCTCGCAATGTTGCAACCTCGCTTGATGAATCTGAACTTGCACGGAAGATTGTATATCGTTGGGAAGAAGCTTCATCGGAAGTGAGACAAGCCTACAAGGAGTTTATAGGAGCAGTAGTTGGCTTGGTTGATGGAGAATTGCGCTCCGAGGAGTTCCATGAGGTGGCACTGACAGTGTACCACATTTTCAGCAGGCCAATTGAAGTGGAGGATTCTATTGATAGAATTGTTTATGATAAAAAGTTAGAATTGCAAAACCTTGTCGGTCATGCAATTGCTGATACCAAGTTGAGGCAAGTTGCATCTCTTGCACAGAAACTCTTACATTTGCAACCTCACAATACAAATTCTACCGTTTCTTTGGAAAGGCATCATGATGTTGAGGATGGTATGGAATTTGGAGATGATTTGGTTTTTCAAGCCCCAGCTCGTTTCTTGGTTGATGTATCCTTAGATGATGGAGACATAATGGATTTCAAAAACACAGTTTCATTGGCATATCAGAAAGAAGAGTATAGTCATACTGACCCAACAAACCATTTTGTAGTTGAAGTAGAAAAGTTCAATTTGACCTGGTTGAGAGATGCATGTGATAAAATTGTTAGGAATTGTAATTCACAGTTATCCCGAGATGAACTGGCAATGGCCATTTGTAGGGTTCTTAATTCAGAAAAGCCTGGCGAAGAGATAGCTGGAGATTTGTTGGACCTTGTTGGGGATAGTGCATTTGAAACTGTGCAAAATCTTCTATTGCATCGGAAGGAGATTGTTGATTCTATTCATTATGGCTTATCGGTATTCAAGTCTGATAAGAATGCTTCAAATGCTCAGTCTCGCATGCCTAGTTATGGGACGCAGGTGACTGTACAAACAGAATCAGGAAAACAAATTGACAAGCTTCGACGCAAGgaggaaaagaaaaacagaCGAGGAATAGAACATGCTGGGGACGATGACTTGTCAACATTGGATTTCTCATCTTTACTTCAAGCAAGTGAGAGGAAACATTTGGTTGATGGGATGATTGGTTCTGGAGATAAGTCAATAGCTGTTAATGCTCTTCCTGAAGGAACTATCAGAAAGTATCGTAAGGGGTATGAAGAAGTTATTATTCCTCCAAAACCAACTGCGCCAATGAAACCTGGAGAAAGGCTGATTGAAATTGGGGAGTTAGATGAGTTTGCTCAAGCTGCTTTCCGTGGTTACAAATCGCTAAACCGTATTCAGAGCAGGATATTTCAAACTGTttatggaacaaatgagaatATACTAGTGTGTGCCCCCACAGGAGCTGGCAAAACTAACATAGCTATGATTTCAATTCTTCACGAGATTGGACAACACTTCAGGGATGGTTacttgcacaaagatgaatttaAGATAGTTTATGTTGCTCCAATGAAGGCTTTGGCTGCAGAAGTCACTTCAACATTCAGCCAACGTTTATCTCCATTGAATATGAGTGTCAGAGAGCTTACTGGAGATATGCAGCTCTCTAAAAATGAACTAGAAGAAACTCAGATGATAGTGACAACACCTGAGAAATGGGATGTCATAACTCGCAAGAGCAGTGACATGTCGCTCTCGATGCTGGTGAAGCTCTTAATTATTGATGAAGTGCATCTACTGAATGATGATAGAGGTCCTGTAATAGAGGCTTTAGTTGCTAGGACACTGCGGCAGGTGGAGTCCACCCAGACAATGATACGCATTGTGGGCCTTTCTGCCACACTCCCCAATTACCTAGAGGTTGCTCAGTTTCTCAGAGTAAATCCAGACACAGGGCTTTTCTTCTTTGATTCAAGTTATCGCCCTGTGCCTCTTGCACAACAATATATTGGAATTAGTGAGCCAAACTTTGTAGCTCGTAATGAATTGTTGAATTCTATATGCTATAACAAGgTTGTTGATTCTATTAGGCAAGGTCATCAGGCAATGGTTTTTGTTCATTCACGAAAAGACACTGCAAAGACTGCTCAGAAACTGGTTGAACTTGCACGAATGAATGAAGACTTGGAACTCTTCAACAATGACACAAATCCACATTATTTCTTTATGAAGAAAGAAGTCattaaatcaagaaacaaaGATCTCGTTCAACTTTTTGAATCTGGCATGGGTATTCATCATGCTGGGATGTTACGTTCAGATAGAGGACTGACTGAGAGGCTTTTCTCTGATGGGCTTTTGAAGGTACTTGTCTGCACAGCAACTCTGGCATGGGGTGTCAATCTACCTGCTCACACAGTTGTAATTAAGGGAACCCAAATATATGATGCAAAAGCTGGTGGGTTTCGAGACCTGGGCATGCTTGATGTGATGCAGATATTTGGGCGAGCTGGGAGACCTCAGTTTGATAAAAGTGGTGAAGGTATCATAATTACATCTCACGACAAACTAGCATATTATTTGCGACTATTGACGAGTCAACTCCCAATTGAAAGCCAGTTTATTAGCTCGTTGAAAGATAATTTGAATGCAGAGGTTGCATTGGGTACCGTAACTAATGTTAAGGAAGCCTGTGCATGGTTGGGATATACCTATCTTTTCATAAGGATGAGGATGAATCCTTTGGCTTATGGTATTGGTTGGGACGAGGTGATGGCAGATCCTGCTTTGAGTTCTAAGCAAAGATCTCTTGTTGTTGATGCTGCACGTTCACTTGATAAAGCAAAAATGATGAGGTTTGATGAGAAAAGTGGCAATTTTTACTGTACTGAGCTTGGTCGCATTGCAAGCCACTTTTACATTCAATATTCCAGTGTTGAAACATACAATGAAATGTTGAGACGTCACATGAATGATAGTGAGGTGATTAACATGGTTGCACATTCATCTGAATTTGAGAATATTGCTGTTCGAGACGAAGAACAGGATGAGCTAGAGATGCTGGTACGCACATCATGTCCATTAGAAGTTAAGGGCGGTCCTTCCAACAAACATGGAAAGATTTCCATTCTGATTCAGTTGTACATATCTCGAGGCTCTACAGATTCTTTTTCATTGGTTTCTGACGCTTCATACATAAGTGCAAGCTTGGCCCGCATATTGCGAGCTTTATTTGAGATTTGTTTACGAAGAGGATGGTGTGAGATGTCGTTGTTCATGTTGGATTATTGCAAAGCTGTAGATCGCCAAGTTTGGCCGCACCAACATCCCCTTAGACAATTTGACAGGGACCTTTCTGCAGAGATATTGCGGAAGCTTGAAGAGCGAGGGGCTGACTTAGATCACTTGATGGAGATGGAGGAAAAAGACATTGGGGCATTAATTCGTTATGCACCTGGAGGAAGGGTGGTCAAGCAATACCTAGGGTATTTTCCCTCACTTCAGTTATCAGCAACTGTGAGTCCAATAACCAGAACTGTCTTGAAGGTTGATCTGGTCATAACACCTACTTTTATTTGGAAAGATCGTTTTCATGGTACTGCTCAACGCTGGTGGATTTTGGTAGAGGATTCTGAGAATGATCATATTTACCACTCAGAACTTCTTACCCTGACAAAACGGATGGCCAAGGGAGACCCTTACAAGCTTTCCTTCACTGTGCCTATATTTGAACCACATCCACCGCAATATTACATTCATGCTGTTTCTGATTCATGGCTTCATGCAGAAGCCTTCTACACTATTACCTTTCATAATTTGCCATTACCAGAGGTCTCTACTTCTCACACAGAACTACTTGATTTGAAACCTCTTCCTGTGTCCTCTCTAGGAAACATTGATCATGAAGCGTTATAtaaattttcacattttaacCCCATACAAACACAGACTTTTCATGTCTTGTATCACACGGACAATAATGTTCTATTAGGAGCTCCTACTGGAAGTGGAAAAACTATTTCTGCTGAGCTTGCTATGCTCCGGCTTTTCAACACCCAGCCTGATATGAAGGTTATTTATATAGCACCTTTGAAGGCTATTGTTAGGGAAAGAATGAGTGACTGGAAAAAGCGTCTTGTGTCTCAGCTTGGGAAAAAAATGGTTGAAATGACTGGCGACTATACTCCTGATTTGATGGCACTCTTGTCTGCCAATATCATCATATCTACTCCTGAAAAGTGGGATGGTATAAGTCGTAATTGGCATAGTCGTAGCTATGTCACAAAGGTTGGACTTATCATATTGGACGAGATTCACTTGTTGGGAGCTGATCGTGGGCCCATCCTTGAGGTTATTGTTTCTAGGATGAGATATATATCATCACAAACAGAGCGTGCAGTACGGTTTGTAGGTCTTTCTACAGCTCTGGCGAATGCTGgTGATCTAGCTGACTGGTTAGGCGTGGAGGAGATTGGACTCTTCAATTTCAAGCCAAGTGTGAGGCCTGTACCTTTGGAAGTTCATATCCAGGGATATCCTGGAAAGTATTACTGCCCACGGATGAACAGTATGAATAAACCAGCATATGCTGCCATATGCACACATTCGCCTGCAAAACCAGTTCTTATATTTGTCTCATCACGACGCCAGACACGACTTACTGCACTAGATCTAATTCAGTTTGCTGCTGCAGATGAACATTCAAGGCAATTTCTTAATATGCCCGAAGAAGCACTGCAGATGGTTTTGTCTCAAGTCACTGACCAAAACTTGAGGCATACTTTACAATTTGGTATCGGTTTACATCATGCAGGCCTGAATGACAAAGACAGATCTTTTGTTGAGGAACTTTTTGCAAATAACAAGATTCAGGTATTGGTTTGTACCAGTACACTGGCTTGGGGTGTGAATCTGCCAGCTCATCTAGTCATCATCAAGGGGACAGAATACTATGATGGAAAAGCAAAGAGATACGTTGATTTTCCAATCACCGATATCTTGCAAATGATGGGTCGTGCTGGACGACCCCAATTTGATCAACACGGGAAGGCAGTGATACTTGTTCATGAACCCAAGAAGAGCTTCTACAAAAAGTTCTTGTATGAACCCTTTCCAGTGGAGAGTAGTTTGAGGGAGCGGCTGCATGATCACATAAATGCTGAAATTGTTTCTGGAACAATCTGCCATAAACAAGATGCAGTGCATTACCTTACATGGACTTACTTATTCCGTAGACTGATGGTCAATCCTGCGTACTATGGATTGGAGAATGTAGAACCTGAATTTCTAAGTTCATTTTTGTCTAGCCTAATACAAAGCACATTTGAGGATTTGGAAGATAGTGGATGCATAAAGATGAATGAAGATGCAGTAGAGCCAGTAATGTTGGGGTCGGTAGCATCTCAGTATTACCTCAGCTACATGACTGTGTCAATGTTTGGTTCAAACATCAATCCAGATACATCACTTGAAGTCTTTCTGCATGTCTTATCTGCTGCTTCCGAATTTGATGAACTTCCTGTGCGTCACAATGAGGAAAAATACAACGAAGGACTGTCTGAGAAAGTAAGATATCCTGTGGATAAGAACCATTTGGACGACCCTCATGTCAAAGCAAATCTTCTATTTCAGTGTCATTTTTCCCAATTGGAGTTACCTATTAGTGATTATGCCACAGACTTGAAATCAGTATTAGATCAGAGTATCCGTATAATCCAGGCCATGATTGATGTATGTGCAAATAGTGGTTGGCTTTCGAGCTCTATAACTTGCATGCATCTTCTGCAAATGGTAATGCAGGGTCTGTGGTTTGACAAGGACTCTTCGTTGTGGATGCTCCCATGCATGAATACTGATCTTATAACTTCACTAAGCAAAAGAGGAATTTATAGTTTACAAGAATTGCTAGATATTCCCAGGGCAGCATTGCAGACTGCGATTGGAAATTTCCCAGCTTCAAGATTGTATCAGGATCTACAGCACTTCCCTCAtgttaaaatgaaattaaagcTTCAAGAGAAGGAGACTGGTAGTGAGAGGTGCCATATATTACACATCAGATTAGAAAAGCTCAACTCTAGACGGCACTCATCTAGAGCATTTGTTCCTCGATTTCCAAAGATAAAAGAGGAGCAATGGTGGTTGGTTCTTGGTAATACCTCTACATCTGAGCTATATGCTCTGAAAAGAGTTTCGTTTTCGGATCACTTAGTTACAACAATGAAGTTGCCTCCAACTGCAGCAAATCTTCAGGATGTAAAAGTGATTCTAGTCTCCGACTGTTACATTGGATTTGAACAAGAGCATTCCGTTACATAG 6246 0.4067 MLIQIPRLTNSLREPFDIDQAYLHRKTFLQNQKPRNVATSLDESELARKIVYRWEEASSEVRQAYKEFIGAVVGLVDGELRSEEFHEVALTVYHIFSRPIEVEDSIDRIVYDKKLELQNLVGHAIADTKLRQVASLAQKLLHLQPHNTNSTVSLERHHDVEDGMEFGDDLVFQAPARFLVDVSLDDGDIMDFKNTVSLAYQKEEYSHTDPTNHFVVEVEKFNLTWLRDACDKIVRNCNSQLSRDELAMAICRVLNSEKPGEEIAGDLLDLVGDSAFETVQNLLLHRKEIVDSIHYGLSVFKSDKNASNAQSRMPSYGTQVTVQTESGKQIDKLRRKEEKKNRRGIEHAGDDDLSTLDFSSLLQASERKHLVDGMIGSGDKSIAVNALPEGTIRKYRKGYEEVIIPPKPTAPMKPGERLIEIGELDEFAQAAFRGYKSLNRIQSRIFQTVYGTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTSTFSQRLSPLNMSVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISEPNFVARNELLNSICYNKVVDSIRQGHQAMVFVHSRKDTAKTAQKLVELARMNEDLELFNNDTNPHYFFMKKEVIKSRNKDLVQLFESGMGIHHAGMLRSDRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQIYDAKAGGFRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMADPALSSKQRSLVVDAARSLDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVINMVAHSSEFENIAVRDEEQDELEMLVRTSCPLEVKGGPSNKHGKISILIQLYISRGSTDSFSLVSDASYISASLARILRALFEICLRRGWCEMSLFMLDYCKAVDRQVWPHQHPLRQFDRDLSAEILRKLEERGADLDHLMEMEEKDIGALIRYAPGGRVVKQYLGYFPSLQLSATVSPITRTVLKVDLVITPTFIWKDRFHGTAQRWWILVEDSENDHIYHSELLTLTKRMAKGDPYKLSFTVPIFEPHPPQYYIHAVSDSWLHAEAFYTITFHNLPLPEVSTSHTELLDLKPLPVSSLGNIDHEALYKFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWKKRLVSQLGKKMVEMTGDYTPDLMALLSANIIISTPEKWDGISRNWHSRSYVTKVGLIILDEIHLLGADRGPILEVIVSRMRYISSQTERAVRFVGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAAADEHSRQFLNMPEEALQMVLSQVTDQNLRHTLQFGIGLHHAGLNDKDRSFVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRERLHDHINAEIVSGTICHKQDAVHYLTWTYLFRRLMVNPAYYGLENVEPEFLSSFLSSLIQSTFEDLEDSGCIKMNEDAVEPVMLGSVASQYYLSYMTVSMFGSNINPDTSLEVFLHVLSAASEFDELPVRHNEEKYNEGLSEKVRYPVDKNHLDDPHVKANLLFQCHFSQLELPISDYATDLKSVLDQSIRIIQAMIDVCANSGWLSSSITCMHLLQMVMQGLWFDKDSSLWMLPCMNTDLITSLSKRGIYSLQELLDIPRAALQTAIGNFPASRLYQDLQHFPHVKMKLKLQEKETGSERCHILHIRLEKLNSRRHSSRAFVPRFPKIKEEQWWLVLGNTSTSELYALKRVSFSDHLVTTMKLPPTAANLQDVKVILVSDCYIGFEQEHSVT 2081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g00567 2081 Pfam Sec63 Brl domain 938 1244 IPR004179 -
Tsu03g00567 2081 SMART helicmild6 729 817 IPR001650 -
Tsu03g00567 2081 SMART helicmild6 1561 1653 IPR001650 -
Tsu03g00567 2081 SMART AAA_5 1300 1471 IPR003593 -
Tsu03g00567 2081 SMART AAA_5 452 633 IPR003593 -
Tsu03g00567 2081 MobiDBLite consensus disorder prediction 307 349 - -
Tsu03g00567 2081 Coils Coil 1099 1119 - -
Tsu03g00567 2081 Pfam DEAD/DEAH box helicase 440 613 IPR011545 GO:0003676|GO:0005524
Tsu03g00567 2081 SUPERFAMILY E set domains 1990 2080 IPR014756 -
Tsu03g00567 2081 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1295 1470 IPR014001 -
Tsu03g00567 2081 Pfam Helicase conserved C-terminal domain 671 815 IPR001650 -
Tsu03g00567 2081 Pfam Helicase conserved C-terminal domain 1565 1651 IPR001650 -
Tsu03g00567 2081 Pfam Sec63 Brl domain 1769 2080 IPR004179 -
Tsu03g00567 2081 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 664 862 IPR001650 -
Tsu03g00567 2081 Pfam DEAD/DEAH box helicase 1288 1452 IPR011545 GO:0003676|GO:0005524
Tsu03g00567 2081 CDD DEXHc_ASCC3_1 437 633 - -
Tsu03g00567 2081 CDD SF2_C_Ski2 637 828 - -
Tsu03g00567 2081 PIRSF BRR2 12 2081 - -
Tsu03g00567 2081 Gene3D - 1776 1912 - -
Tsu03g00567 2081 Gene3D - 939 1081 - -
Tsu03g00567 2081 Gene3D - 1478 1682 IPR027417 -
Tsu03g00567 2081 PANTHER SEC63 DOMAIN-CONTAINING 430 467 - -
Tsu03g00567 2081 Gene3D C2 domain 1970 2081 IPR035892 -
Tsu03g00567 2081 Gene3D - 426 637 IPR027417 -
Tsu03g00567 2081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1172 1470 IPR027417 -
Tsu03g00567 2081 Gene3D - 1251 1477 IPR027417 -
Tsu03g00567 2081 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1501 1710 IPR001650 -
Tsu03g00567 2081 Gene3D - 638 840 IPR027417 -
Tsu03g00567 2081 SUPERFAMILY Sec63 N-terminal domain-like 1802 1957 - -
Tsu03g00567 2081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 845 IPR027417 -
Tsu03g00567 2081 Gene3D - 1683 1775 IPR036388 -
Tsu03g00567 2081 SUPERFAMILY Sec63 N-terminal domain-like 966 1141 - -
Tsu03g00567 2081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 622 IPR027417 -
Tsu03g00567 2081 Gene3D C2 domain 1140 1249 IPR035892 -
Tsu03g00567 2081 CDD SF2_C_Ski2 1477 1665 - -
Tsu03g00567 2081 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 430 467 - -
Tsu03g00567 2081 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 468 2080 - -
Tsu03g00567 2081 PANTHER SEC63 DOMAIN-CONTAINING 468 2080 - -
Tsu03g00567 2081 CDD DEXHc_ASCC3_2 1285 1473 - -
Tsu03g00567 2081 SMART ultradead3 1282 1486 IPR014001 -
Tsu03g00567 2081 SMART ultradead3 434 645 IPR014001 -
Tsu03g00567 2081 SUPERFAMILY "Winged helix" DNA-binding domain 1681 1781 IPR036390 -
Tsu03g00567 2081 SUPERFAMILY "Winged helix" DNA-binding domain 845 950 IPR036390 -
Tsu03g00567 2081 Gene3D - 1083 1137 - -
Tsu03g00567 2081 MobiDBLite consensus disorder prediction 307 327 - -
Tsu03g00567 2081 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 447 629 IPR014001 -
Tsu03g00567 2081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1472 1681 IPR027417 -
Tsu03g00567 2081 MobiDBLite consensus disorder prediction 328 349 - -
Tsu03g00567 2081 SMART Sec63_2 938 1246 IPR004179 -
Tsu03g00567 2081 SMART Sec63_2 1769 2080 IPR004179 -
Tsu03g00567 2081 Gene3D - 847 937 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g00567 Tsu-Chr3 4842760 4873617 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g00567 K18663 - gmx:100811503 3751.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g00567 03 4842760 4873617 Tsu03g00567 03 4842760 4873617 ECH