Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05574 ATGGTTCTCGCACAGTTAGGAGGGAGCATTACTCGTGCTCTTCAGCAGATGACCAATGCAACAGTGATCGACGAGAAAGTTTTCAACGATTGTCTCAACGAAATCAATCGAGCTCTTCTTCAATCAGATGTTCAATTCAAGCTCGTTCAAGACATGCACACTAACATCAAGAAGATCGTTAATCTCCAAGATCTCGCCGCAGGCCATGACAAACGCAAAATCATTCAACAAGCTGTGTTTAACGAACTCTGCAAAATGTTGGATCCTGGAAAATCATCTTTTGTTCCCAAAAAAGGGAAAACAAGTGTAGTCATGTTTGTTGGATTGCAAGGTTCTGGAAAAACTACGACGTGTACAAAATATGCGCATTATTATCAGAAGAAAGGGTGGAAGCCTGCTTTAGTTTGTGCAGATACATTTAGAGCTGGTGCATTTGATCAATTGAAGCAAAATGCTACTAAAGCTAAAATCCCTTTTTATGGAAGCTATATGGAGTCAGACCCTGTCAAAATTGCCGTAGAAGGTGTGGAGAGATTCAAGGAAGAAAACCGTGATCTTATAATTGTTGATACCAGTGGGCGGCACAAACAAGAAGCGGCTCTTTTTGAAGAAATGCGCCAAGTGTCGGAAGCAACGAAACCAGATCTTGTTATATTTGTCATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTTGCCGTTGGAGCTGTAATTATTACCAAAATGGATGGCCATGCCAAGGGCGGTGGTTCTCTTAGCGCTGTTGCAGCAACAAAGAGTCCTGTCATATTCATAGGAACTGGTGAACATATGGATGAGTTTGAAGTTTTTGAAGTTAAGCCATTTGTTAGTCGTCTATTAGGCATGGGGGACTTGTCTGGGTTTGTGGACAAAATACATGACAATGTTCCTATGGACAAACAGcttgaatttcttcaaaagTTGTCTGAAGGCTTCACCTTGAGGATTATGTATCAGCAATTTCAGAACATGCTTAGTATGGGTCCTATGAGCCAGGTCTTTTCTATGCTTCCAGGATTTAGTTCTGAGTTAATGCCAAAAGGCCAAGAGAAAGAAAACCATGCAAAAGTTAAGCGTTACATGACAATAATGGATTCAATGACAAATGAAGAGTTGGATAGTTCAAATCCAAAGCTCATGAATGAATCACGTATGATGCGAATAGCCCGAGGTTCTGGTTGTCTAGTTAGGGAAGTGTTAGACGTGATGGAAGAGTACAAACGTCTTGCAAAGTCATTCAGCAAAAAGAAAGGACTTAAAATACCAAAGAAGGGTGACATGAGTGCCCTATCTCAAAATATGAGTGCACAGAGCATGGCCAAAGCCCTCCTCCCTCCATCGATGCTGAAGCAAATTGGTGGCATGGGCGGGTTACAAGACTTAATGAAGCAGATGGGATCTTCTAAAGACATGATGGGAATGTTTGGTGGTGGTAAATAG 1485 0.4128 MVLAQLGGSITRALQQMTNATVIDEKVFNDCLNEINRALLQSDVQFKLVQDMHTNIKKIVNLQDLAAGHDKRKIIQQAVFNELCKMLDPGKSSFVPKKGKTSVVMFVGLQGSGKTTTCTKYAHYYQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKEENRDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGSLSAVAATKSPVIFIGTGEHMDEFEVFEVKPFVSRLLGMGDLSGFVDKIHDNVPMDKQLEFLQKLSEGFTLRIMYQQFQNMLSMGPMSQVFSMLPGFSSELMPKGQEKENHAKVKRYMTIMDSMTNEELDSSNPKLMNESRMMRIARGSGCLVREVLDVMEEYKRLAKSFSKKKGLKIPKKGDMSALSQNMSAQSMAKALLPPSMLKQIGGMGGLQDLMKQMGSSKDMMGMFGGGK 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05574 494 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Tsu02g05574 494 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Tsu02g05574 494 Gene3D - 5 306 IPR042101 -
Tsu02g05574 494 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 426 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Tsu02g05574 494 Pfam Signal peptide binding domain 327 426 IPR004125 GO:0006614|GO:0008312|GO:0048500
Tsu02g05574 494 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Tsu02g05574 494 CDD SRP54_G 102 294 - -
Tsu02g05574 494 SUPERFAMILY Signal peptide-binding domain 298 429 IPR036891 GO:0006614|GO:0008312|GO:0048500
Tsu02g05574 494 Gene3D - 313 433 IPR036891 GO:0006614|GO:0008312|GO:0048500
Tsu02g05574 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 298 IPR027417 -
Tsu02g05574 494 SMART AAA_5 100 277 IPR003593 -
Tsu02g05574 494 Gene3D - 91 285 IPR027417 -
Tsu02g05574 494 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 492 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Tsu02g05574 494 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Tsu02g05574 494 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 492 - -
Tsu02g05574 494 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Tsu02g05574 494 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 477 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Tsu02g05574 494 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05574 Tsu-Chr2 63981740 63985412 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05574 K03106 - jre:109013924 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05574 02 63981740 63985412 Tsu02g05574 02 63981740 63985412 ECH
Tsu02g05574 02 63981740 63985412 Tsu06g00189 06 1582053 1587069 PCT