Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05492 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAGAGATCAGAAAGAGTGAAATGTGTGGATCTACATCCAACAGAACCATGGATTCTGGCAAGTTTATACTCTGGAACAGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAATCTTTCGAGGTCACTGAGTTACCAGTTAGATCAGCCAAGTTTGTTGCACGCAAACAGTGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAAAGTATTTGAAGCACATACAGATTACATTAGGTGTGTGGCAGTTCATCCCACCCTTCCTTATGTTCTGTCATCATCCGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAAGGCTGGATTTGTACCCAGATATTTGAAGGACATTCTCATTATGTTATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCGTCTCTTGATCGCACTATAAAGATTTGGAATCTTGGCTCTCCTGATCCTAATTTTACATTGGATGCTCACCAGAAAGGAGTGAATTGTGTTGATTACTTTACAGGCGGTGACAAACCTTATCTAATCACCGGTTCTGACGATCACACTGCAAAGGTGTGGGATTATCAGACTAAAAGTTGTGTCCAGACCCTGGATGGTCACACCCACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGACGGTACAGTGCGCATATGGCACTCAACAACTTATCGGCTTGAGAATACATTGAACTATGGTCTCGAAAGAGTTTGGGCTATTGGATACATGAAGAGTTCACGTCGGGTTGTGATTGGATATGACGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTAGCTAGCATGGACAACAGTGGAAAAATTATTTGGGCTAAACATAATGAAATTCAGACTGTCAATATAAAGAGCATAGGAGCAGATTTGGAGGTTGCTGATGGAGAAAGGTTGCCTTTGGCTGTGAAGGAGCTAGGCACTTGTGATCTTTACCCACAAAATTTAAAGCACAATCCTAATGGAAGGTTCGTTGTTGTATGTGGAGATGGCGAGTATATTATATACACTGCATTGGCATGGAGAAATAGGTCATTTGGTTCAGCGCTAGAGTTTGCTTGGTCTACGGATGGAGAATATGCTGTCAGAGAAAGtacttcaaaaattaaaattttcagcAAAAGTTTCCAGGAAAAGAAGAGTGTCCGACCAACATTTTCAGCTGAACGAATATTTGGTGGCACTTTACTGGCAATATGTTCAAATGATTTCATCTGTTTTTATGATTGGTCCGAGTGCAGGTTGATTTACCGCATTGATGTCAATGTCAAAAACCTCTACTGGGCTGATAGTGGTGACCTAGTAACCATTGCTAGTGATACATCATTCTACATCCTGAAGTACAATCGTGATGTTGTTGCATCACATATAGATAGTGGTAGACCCGTAGATGAGGAAGGTGTTGAAGATGCTTTTGAGCTTCTTCATGAAATGAATGAACGTGTAAGGACAGGTATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCGCTTGGAGACTTAATTACTGTGTTGGTGGAGAGGTGACTACAATGTTCCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGGGTGTTTTTGATTGACAAAGAATTTAATGTTGTGGGATACACACTGCTTTTGAGTTTGATCGAGTACAAGACACTCGTGATGCGTGGTGACTTGGAAAGGGCTAATGAAGTTCTACCATCAATTCCTAAAGAGCATCATAACAGTGTTGCTCGATTCCTGGAATCACGGGGGATGATAGAGGATGCTCTTGAAGTAGCTACAGACCCTGACTACAGATTTGATCTAGCAATACAGCTTGGGAGATTAGAAGTTGCAAAGGGCATTGCACTAGAGGTACAGAGTGAGTCTAAATGGAAGCAGCTGGGAGAATTAGCTATGTCTTCTGGAAAGTTGCAAATGGCTGAGGAATGTTTGAATCATGCAATGGATTTGAGTGGGTTGCTACTGCTATATTCTTCTTTCGGAGATGCTGAAGGAATTTCAAAACTTGCAACCCTTGCTAAGGAGCAAGGGAAGAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAACTTGAAGACTGCCTTCAACTATTGATAGAAAGTAATCGAATTCCAGAGGCAGCTTTAATGGCTCGATCTTATCTCCCTAGTAAGGTCCCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAATAAGGTAATGTATGGTTCAGGTATATGGTATTTGCTTATTATGGAAGTTGCTGGTTTAGGGTTGTGGGAATCCATATTGTTTAGGGTATTTTAG 2430 0.4086 MPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYMKSSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSIGADLEVADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFAWSTDGEYAVRESTSKIKIFSKSFQEKKSVRPTFSAERIFGGTLLAICSNDFICFYDWSECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASHIDSGRPVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSAWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVFLIDKEFNVVGYTLLLSLIEYKTLVMRGDLERANEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKGIALEVQSESKWKQLGELAMSSGKLQMAEECLNHAMDLSGLLLLYSSFGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLIESNRIPEAALMARSYLPSKVPEIVAIWRKDLNKVMYGSGIWYLLIMEVAGLGLWESILFRVF 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05492 809 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Tsu02g05492 809 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Tsu02g05492 809 Gene3D - 590 785 - -
Tsu02g05492 809 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Tsu02g05492 809 PIRSF Beta'-COP 2 791 IPR016453 -
Tsu02g05492 809 CDD WD40 17 297 - -
Tsu02g05492 809 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Tsu02g05492 809 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Tsu02g05492 809 SMART WD40_4 46 85 IPR001680 GO:0005515
Tsu02g05492 809 SMART WD40_4 4 43 IPR001680 GO:0005515
Tsu02g05492 809 SMART WD40_4 174 215 IPR001680 GO:0005515
Tsu02g05492 809 SMART WD40_4 218 257 IPR001680 GO:0005515
Tsu02g05492 809 SMART WD40_4 88 127 IPR001680 GO:0005515
Tsu02g05492 809 SMART WD40_4 131 171 IPR001680 GO:0005515
Tsu02g05492 809 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Tsu02g05492 809 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Tsu02g05492 809 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Tsu02g05492 809 Gene3D - 11 300 IPR015943 GO:0005515
Tsu02g05492 809 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Tsu02g05492 809 PANTHER COATOMER SUBUNIT BETA' 1 782 - -
Tsu02g05492 809 Pfam WD domain, G-beta repeat 18 43 IPR001680 GO:0005515
Tsu02g05492 809 Pfam WD domain, G-beta repeat 134 171 IPR001680 GO:0005515
Tsu02g05492 809 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Tsu02g05492 809 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Tsu02g05492 809 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Tsu02g05492 809 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Tsu02g05492 809 PANTHER COATOMER 1 782 - -
Tsu02g05492 809 SUPERFAMILY WD40 repeat-like 227 494 IPR036322 GO:0005515
Tsu02g05492 809 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Tsu02g05492 809 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Tsu02g05492 809 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05492 Tsu-Chr2 63242346 63252202 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05492 51 292 Miscellaneous Gene Families AT5G08390 24.597 5.53e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05492 K17302 - gmx:100815780 1524.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05492 02 63242346 63252202 Tsu02g05492 02 63242346 63252202 ECH
Tsu02g05492 02 63242346 63252202 Tsu06g00264 06 2188086 2200026 PCT