Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05293 ATGCCAACTATTTTACTTAGAATTTTCCTTCTATACAACGTTGTCAATTCATTTCTCATAAGTCTTGTTCCTAAGAAACTCAGAACTTTCTTTCCACATTCTTGGTTTACTCATCAAACCTTAACCAATCTCATTCAAACTACTACTATAACAAAcacttcttcatcatcatcaaaaacaaGTCTTGTTATTACCAAGACAAAAACAATGGATCCAAATGAACTCAAACGTGTTTTTCAAATGTTTGATCGTAACGACGATGGCCGAATAACAAAAAAGGAGCTGAATGATTCCTTGGAGAATTTAGGAATCTTTATTCCTGACAAAGAGTTAAGTCAAATGATCGAGAAGATCGATGTTAACCGAGACGGATGTGTTGATATTGAGGAATTTAAAGAGTTGTATGAGTCTATTATGGATGAACGTGTTGAAGATGAGGAAGAAGATATGAGGGAAGCATTCAATGTGTTTGATCAAAATGGAGATGGGTTTATTAGTGTTGATGAATTGAGATCTGTTTTGGTTTCTTTGGGATTGAAACAAGGAAGAACTGTTGAAGATTGTAAGAAAATGATTGGAAATGTTGATGTTGATGGAAATGGTTTGGTTGATTATAAGGAGTTTAAGCAAATGATGAAGGGTGGTACTTTATCTGCTCTcagttag 666 0.3243 MPTILLRIFLLYNVVNSFLISLVPKKLRTFFPHSWFTHQTLTNLIQTTTITNTSSSSSKTSLVITKTKTMDPNELKRVFQMFDRNDDGRITKKELNDSLENLGIFIPDKELSQMIEKIDVNRDGCVDIEEFKELYESIMDERVEDEEEDMREAFNVFDQNGDGFISVDELRSVLVSLGLKQGRTVEDCKKMIGNVDVDGNGLVDYKEFKQMMKGGTLSALS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05293 221 SMART efh_1 110 138 IPR002048 GO:0005509
Tsu02g05293 221 SMART efh_1 187 215 IPR002048 GO:0005509
Tsu02g05293 221 SMART efh_1 149 177 IPR002048 GO:0005509
Tsu02g05293 221 SMART efh_1 74 102 IPR002048 GO:0005509
Tsu02g05293 221 SUPERFAMILY EF-hand 73 215 IPR011992 -
Tsu02g05293 221 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Tsu02g05293 221 ProSitePatterns EF-hand calcium-binding domain. 158 170 IPR018247 -
Tsu02g05293 221 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Tsu02g05293 221 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Tsu02g05293 221 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 218 - -
Tsu02g05293 221 CDD EFh 151 213 IPR002048 GO:0005509
Tsu02g05293 221 Gene3D - 137 217 - -
Tsu02g05293 221 Pfam EF-hand domain pair 147 213 IPR002048 GO:0005509
Tsu02g05293 221 Pfam EF-hand domain pair 74 136 IPR002048 GO:0005509
Tsu02g05293 221 ProSiteProfiles EF-hand calcium-binding domain profile. 106 141 IPR002048 GO:0005509
Tsu02g05293 221 ProSitePatterns EF-hand calcium-binding domain. 196 208 IPR018247 -
Tsu02g05293 221 ProSiteProfiles EF-hand calcium-binding domain profile. 183 218 IPR002048 GO:0005509
Tsu02g05293 221 PANTHER BNAA04G25000D PROTEIN 6 218 - -
Tsu02g05293 221 Coils Coil 128 148 - -
Tsu02g05293 221 ProSitePatterns EF-hand calcium-binding domain. 119 131 IPR018247 -
Tsu02g05293 221 Gene3D - 34 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05293 Tsu-Chr2 61691106 61692608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05293 5 219 EF-hand Containing Proteins AT2G43290 63.303 5.49e-95 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05293 K13448 - gmx:100527487 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05293 02 61691106 61692608 Tsu02g05293 02 61691106 61692608 ECH
Tsu02g05293 02 61691106 61692608 Tsu02g02248 02 22527612 22528219 PCT