Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05169 ATGGCTCGTCGTGAGGATTATGATCACCTCATAAAGCTTCTTTTGATCGGCGATAGTGGTGTTGGAAAGAGTTCACTTCTTCTACGCTTCTCTGATAGTGTGTTTGAAACTAGTTATATTACAACTCTAGGcattgattttaaaaataggaCCATAGAGATGGATGGAAAAAAGATTATGCTCCAAATTTGGGATACTGCAGGTCAAGAGCGGTTCCGAACAATTACAACcgCTTACTATCGCGGTGCTATGGGAATATTGCTAGTCTATGATGTTACAAATGAATCTTCATTTAACAATATCAGGAGTTGGATTAGTAGCATTGAGCAACATTCTAAAGACaatattgtaaacaaaataCTGGTTGGGAACAAAGCTGACATGGGTGAAAGCAAAAGGGTGGTGCCTTTTTCCAAGGGCAAAGCTCTAGCAAATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAATCGAAATGTCAATGAAGCTTTCTTCTCAATTACAAGGGATATAAAACAAAGGCTTCCAGACATTGAGTCTACAAAAACGCCGACAAGATTTCGAATCAACAAACGAGATAAGGCAACTGCAAAACATGGTGCACAAAAGTCGGCATGCTGTGGTTGA 633 0.3744 MARREDYDHLIKLLLIGDSGVGKSSLLLRFSDSVFETSYITTLGIDFKNRTIEMDGKKIMLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTNESSFNNIRSWISSIEQHSKDNIVNKILVGNKADMGESKRVVPFSKGKALANEYGIKFFETSAKTNRNVNEAFFSITRDIKQRLPDIESTKTPTRFRINKRDKATAKHGAQKSACCG 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05169 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 195 IPR027417 -
Tsu02g05169 210 ProSiteProfiles small GTPase Ras family profile. 1 210 IPR001806 GO:0003924|GO:0005525
Tsu02g05169 210 PANTHER LD44762P 2 210 - -
Tsu02g05169 210 TIGRFAM small_GTP: small GTP-binding protein domain 10 166 IPR005225 GO:0005525
Tsu02g05169 210 PRINTS Transforming protein P21 ras signature 34 50 - -
Tsu02g05169 210 PRINTS Transforming protein P21 ras signature 52 74 - -
Tsu02g05169 210 PRINTS Transforming protein P21 ras signature 151 173 - -
Tsu02g05169 210 PRINTS Transforming protein P21 ras signature 115 128 - -
Tsu02g05169 210 PRINTS Transforming protein P21 ras signature 11 32 - -
Tsu02g05169 210 SMART rab_sub_5 11 176 - -
Tsu02g05169 210 Pfam Ras family 12 174 IPR001806 GO:0003924|GO:0005525
Tsu02g05169 210 ProSiteProfiles small GTPase Rho family profile. 4 180 - -
Tsu02g05169 210 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 2 210 - -
Tsu02g05169 210 SMART ras_sub_4 12 176 - -
Tsu02g05169 210 Gene3D - 4 209 IPR027417 -
Tsu02g05169 210 ProSiteProfiles small GTPase Rab1 family profile. 6 209 - -
Tsu02g05169 210 SMART ran_sub_2 16 210 - -
Tsu02g05169 210 CDD Rab8_Rab10_Rab13_like 8 176 - -
Tsu02g05169 210 SMART rho_sub_3 13 176 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05169 Tsu-Chr2 60694316 60697202 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05169 K07901 - qsu:111988654 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05169 02 60694316 60697202 Tsu02g05169 02 60694316 60697202 ECH
Tsu02g05169 02 60694316 60697202 Tsu02g02053 02 20024670 20027609 ECH
Tsu02g05169 02 60694316 60697202 Tsu02g02053 02 20024670 20027609 PCT