Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g05085 ATGGCGAGAGGGGGAGGCAGCAAAATGGCCTCAGAGCTGAAGAAATGGTGCTTAACAGAAGGATTCAAATCATTGAAGCATGTAAAACTCGCTCACTGCCGTCTCCTCCGTCTCAACCTCAACCAAAACAACCACCTCCTCAACATAATCCTCCGCTCTTCCTTAATCTTATCAAACACCCAATACCCAATCCTTATTTTccacaaaacaacaacaaatccaaacacTTTTCTCTACAACACCATCATTCGTGGCATGGTTACCAAAGACCGTTTCCATGACGCAGTTCAACTCTATCTCTCAATGCACAAAGCTTCTCTTGTTCCTGATAATTTCACTTTTCCTTTTGTTCTTAAAGCTTGTGCAAGACTCAACCTTTTTCAATTGGGTGTAGCTATTCACTCTCTTGTTTTTAAAACTGGTTTTGATTATGATGTTTTTGTAAAAACgaatattgtttgtttttattcaaaatgtgGGTTTTTAAACGATGCACGGAAGGTGTTTGATGATATTGCTGAGAAAAATGTTGTATCTTGGACTGCTATTATTTGTGGGTGTATTGAGTTTGGTCAGTGTAGGGAGGCTGTTGATTTGTTTAGAGAGTTGTTGGAGACGGGTTTGAGACCTGATGGTTTTGTTATTGTTCGTGTTTTGCGGGCGTGTGCGCGGTTAGGGGATTTAGAGAGTGGGAGGTGGATAGATAGATGTATGAGTGAGTGTGGTTTGCATAAGAATGTTTTTGTGGCTACCTCTTTGGTGGATATGTATGCTAAATGTGGAAGTATGGAGGAAGCGCGTTGTGTTTTTGATGGATTGGTTGAGAAGGATGTTGTTTGTTGGAGTGCAATGATTCAAGGTTATGCATACAATGGGCTACCTAGAGAGGCACTTGAGTTGTTCTTTGAAATGAGGAAGGTAAATGTGAAACCTGATTGTTTTGCCATGGTGGGTGTTCTCTCTTCATGTGCGAGGTTGGGAGCGTTGGAGTTAGGAAATTGGGCTAAGGGTTTGATGGATGAGGAGGAGTTTTTGTGTAACCCTGTGTTGGGTACTTCCTTGATTGACTTTTATGCAAAATGTGGAAGCATGGAGGAGGCTTTGGGGGTTTATAAAATGATGAAGGAGAAAGATCGTGTGGTCTTCAATGCTGTTATTTCTGGACTATCTATTGCAAGGTCAACCTCTGTTGCCAGGAAGACCAAATTCAGTTTCCCTGATATTTTGAGAAATGTAAGCGCTAATCATCTGCGTGTTTGCTCTTGCAACGGCTTCCTTTGTTTCAGCACTGAGATTATCGCTGTTTCTTTGTTTTACGAAGAGAAGATTAATCAAGTTAGTGTTTATACCTTGGGATCGAATTCTTGGAGGAGGATCCAAGACTTGATTAGTAATACGGAGGTATTTCCATGTGGTAGTACTTCGGGAGTATTTGCAAGTGGTACCATTAATTGGTTGACAAGGGATGCTTTAGGTAGTAACGTTTCTCTTGATTTGGAGGAGTTGTATCGAAAGATTTCGAAGCCTAATTTGGAGACAAATCATTGGACCTTGGGAGTTTCGAGGGATTGTTTGTGCATCTTTGCAAATTCAACTGCAACATACAGGAACCCAGCTACATTTCTTCATGCCTATACTTGTCTACCTCTTGCATATGCAACAAGGCAAGCTGTTGGCGCCATCTTGCAAGACATTGCTGATTCCGGTGTTCTGTTTGCAATACTGATGTGCAGACACAAGGTGATTAGCCTATTTGGTGCTCAGAAAGCCTCTCTTCATCCAGATGATATGCTGCTACTGGCCAACTTTGTTATGTCAACAGAGTCCTTTAGGACCTCAAAGGCGTTTTCCCCTGTTTGCTTGCCACGATACAATCCTTTAGCATTTTTGTATGCTTATGTCCATTATTTTGACGATGACACATATTTGTTGTTGCTTACAACTAATTCTGATGCATTTCACCATCTCAAGGATTGCAGGATTCGTATCGAATCGGTCCTTTTGAAGTCAAATGTCCTTGGTGAAGTTCAAAGATCATTGATTGATGGTGGAATGCGTGTTGAGGATCTGCCACCCTTATGTCGTTCTGGATCATCTCATTCAGGCCAGCATAGGCTTCAACCAGATTCTCATGAAAGATTGCGAGAATCTAATTCTGGTGTTGCTGAGTTCTCATCACCTATTAACACTCCTCAGCAGCAGAAAAGATTATTTAGAGCGTACCAGAAACTTTTTGCATCCATGCATGAGAAAGGAATTGGGCCACACAAAACTCAGTTTAAGAGGGACGAAAACTATGGTAATGaatattttaattcatattttCTAGTAGTTATGGTACATCCAATAAATGGATATATGATATTGAATCTTTTATGA 2379 0.3997 MARGGGSKMASELKKWCLTEGFKSLKHVKLAHCRLLRLNLNQNNHLLNIILRSSLILSNTQYPILIFHKTTTNPNTFLYNTIIRGMVTKDRFHDAVQLYLSMHKASLVPDNFTFPFVLKACARLNLFQLGVAIHSLVFKTGFDYDVFVKTNIVCFYSKCGFLNDARKVFDDIAEKNVVSWTAIICGCIEFGQCREAVDLFRELLETGLRPDGFVIVRVLRACARLGDLESGRWIDRCMSECGLHKNVFVATSLVDMYAKCGSMEEARCVFDGLVEKDVVCWSAMIQGYAYNGLPREALELFFEMRKVNVKPDCFAMVGVLSSCARLGALELGNWAKGLMDEEEFLCNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLSIARSTSVARKTKFSFPDILRNVSANHLRVCSCNGFLCFSTEIIAVSLFYEEKINQVSVYTLGSNSWRRIQDLISNTEVFPCGSTSGVFASGTINWLTRDALGSNVSLDLEELYRKISKPNLETNHWTLGVSRDCLCIFANSTATYRNPATFLHAYTCLPLAYATRQAVGAILQDIADSGVLFAILMCRHKVISLFGAQKASLHPDDMLLLANFVMSTESFRTSKAFSPVCLPRYNPLAFLYAYVHYFDDDTYLLLLTTNSDAFHHLKDCRIRIESVLLKSNVLGEVQRSLIDGGMRVEDLPPLCRSGSSHSGQHRLQPDSHERLRESNSGVAEFSSPINTPQQQKRLFRAYQKLFASMHEKGIGPHKTQFKRDENYGNEYFNSYFLVVMVHPINGYMILNLL 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g05085 792 Pfam PPR repeat family 276 324 IPR002885 -
Tsu02g05085 792 Pfam PPR repeat family 74 123 IPR002885 -
Tsu02g05085 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Tsu02g05085 792 TIGRFAM PPR: pentatricopeptide repeat domain 78 110 IPR002885 -
Tsu02g05085 792 TIGRFAM PPR: pentatricopeptide repeat domain 178 211 IPR002885 -
Tsu02g05085 792 TIGRFAM PPR: pentatricopeptide repeat domain 352 378 IPR002885 -
Tsu02g05085 792 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Tsu02g05085 792 TIGRFAM PPR: pentatricopeptide repeat domain 251 280 IPR002885 -
Tsu02g05085 792 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 16 393 - -
Tsu02g05085 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Tsu02g05085 792 Gene3D Tetratricopeptide repeat domain 232 337 IPR011990 GO:0005515
Tsu02g05085 792 Gene3D Tetratricopeptide repeat domain 338 401 IPR011990 GO:0005515
Tsu02g05085 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Tsu02g05085 792 Pfam PPR repeat 178 207 IPR002885 -
Tsu02g05085 792 Pfam PPR repeat 352 377 IPR002885 -
Tsu02g05085 792 Pfam Second Longin domain of FUZ, MON1 and HPS1 570 661 IPR043971 GO:0016192
Tsu02g05085 792 Gene3D Tetratricopeptide repeat domain 23 134 IPR011990 GO:0005515
Tsu02g05085 792 MobiDBLite consensus disorder prediction 694 727 - -
Tsu02g05085 792 Gene3D Tetratricopeptide repeat domain 135 231 IPR011990 GO:0005515
Tsu02g05085 792 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 16 393 - -
Tsu02g05085 792 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g05085 Tsu-Chr2 59847294 59854495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g05085 94 463 Glycoside Hydrolase AT3G49170 24.934 4.06e-32 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g05085 - - pvu:PHAVU_011G213900g 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05085 02 59847294 59854495 Tsu02g03588 02 40272460 40277097 PCT