Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04821 ATGGCGACACTCGATTCCGATGTTCCAATGGTTCCCGCCGGCGAGACTTCCTCCTGCTCTCACGGtgcttcttcttcatccaagaaGCCTAAGCGATTCGAGATCAAGAAGTGGAATGCCGTTTCTCTTTGGGCTTGGGatattgttgttgataattGCGCTATCTGTAGGAATCATATCATGGATCTCTGCATTGAGTGTCAGGCAAATCAGGCTAGTGCTACTAGCGAGGAATGCACAGTTGCTTGGGGGGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGTTGAAGACTCGTCAAGTTTGCCCACTTGATAACAGTGAGTGGGAGTTTCAGAAATACGGTCACTAG 360 0.4444 MATLDSDVPMVPAGETSSCSHGASSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04821 119 ProSiteProfiles Zinc finger RING-type profile. 64 109 IPR001841 -
Tsu02g04821 119 Pfam RING-H2 zinc finger domain 51 109 IPR024766 GO:0008270
Tsu02g04821 119 SUPERFAMILY RING/U-box 31 116 - -
Tsu02g04821 119 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 119 - -
Tsu02g04821 119 MobiDBLite consensus disorder prediction 1 31 - -
Tsu02g04821 119 PANTHER RING BOX 1 119 - -
Tsu02g04821 119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 119 IPR013083 -
Tsu02g04821 119 CDD mRING-H2-C3H2C2D_RBX1 51 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04821 Tsu-Chr2 57434997 57439325 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04821 K03868 - egr:104436408 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04821 02 57434997 57439325 Tsu06g01207 06 11244177 11246624 PCT