Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04805 ATGCAGGCATACTTTCAGACTCTGAGCAGTAAAACGGATGAGAGGCATAGGACGATGGAGGAAGAGTGGAGGAGGCAAGGGCACAGTGATTGGGGAGTCTCACTCTCACCCcccttttatctttatttttcgGGATTCTCTTCTCAACCCTTTCGAATTTTCATTATGGCTAAGAGTTCGTTCAAGATGGAACATCCCCTTGAGAGGAGGCAGGCTGAAGCTGCTCGCATAAGGGAGAAGTATCCCGATAGAATTCCAGTAATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCAGATATTGATAAGAAAAAGTATCTTGTTCCTGCTGATCTAACTGTAGGCCAGTTTGTGTATGTGGTGCGAAAGAGAATCAAGTTGAGTCCTGAGAAGGCTATCTTCATTTTTGTGAAGAACATTTTACCACCAACAGCTGCTATGATGTCTGCAATATATGAGGAAAACAAGGATGAAGATGGATTCCTCTATATGACTTACAGTGGGGAGAACACTTTTGGGATTTTAATGTGA 528 0.4186 MQAYFQTLSSKTDERHRTMEEEWRRQGHSDWGVSLSPPFYLYFSGFSSQPFRIFIMAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGILM 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04805 175 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 45 172 IPR004241 -
Tsu02g04805 175 CDD Ubl_ATG8 67 169 - -
Tsu02g04805 175 SUPERFAMILY Ubiquitin-like 58 172 IPR029071 -
Tsu02g04805 175 Gene3D - 51 173 - -
Tsu02g04805 175 MobiDBLite consensus disorder prediction 1 23 - -
Tsu02g04805 175 Pfam Autophagy protein Atg8 ubiquitin like 69 172 IPR004241 -
Tsu02g04805 175 PANTHER AUTOPHAGY-RELATED PROTEIN 45 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04805 Tsu-Chr2 57249032 57253894 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04805 K08341 - pop:7468504 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04805 02 57249032 57253894 Tsu02g04805 02 57249032 57253894 ECH
Tsu02g04805 02 57249032 57253894 Tsu08g03552 08 53531293 53533567 ECH