Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04679 ATGCACACTCTATCTCCACCTCCCTCTTCCAACACTCTCAATTTCAACCACATAACACGGCCACGTTTAATCCCAAACCGGTTTAACCCGACCCGAATTTCTATCAAATGTGCTTACGGTTTAGAACAAGGAAGCTACGGTTTCGGTTCAAGCCGAGCCGATTTTCAAAGCTCATGCGCTATCTTATCTAGCAAAGTCGCTTCACAAGAAAAACCTTCCGCCGCCGCTGATAACGTCGCCGCCATCAACGGTCACAAAACAAACATCACCGATCTACAACTTGTTCCAATCGGAAACATCGGCGGTGGAGAAATTGAAGCTGTTTCCAAGCCGCTTCTATCAAAGCCGTTAACAATCTCCGACCTAGCTCCGGCTCCGATGCACGGTTCATCTCTTCGTGTCGCTTATCAAGGCGTTCCCGGAGCTTACTCCGAAGCTGCTGCCGGAAAAGCTTATCCGAATTGCGAAGCAATTCCATGTGACCAATTCGAAGTAGCGTTTCAAGCAGTTGAGCTTTGGATCGCCGATCGTGCTGTTTTACCGGTTGAAAATTCACTCGGAGGTTCAATTCATCGGAACTACGATCTTCTCCTCCGTCACCGTCTTCACATCGTCGGAGAAGTTCAACTTCCGGTACATCACTGTCTCCTAGCTTTACCAGGAATCAGAAAAGAATATCTGACACGAGTAATTTCACATCCACAAGCCTTATCTCAATGTGAACACACTTTAACTAAACTCGGCCTCAACGTCGCACGTGAAGCTGTCGATGACACAGCAGGTGCCGCGGAGTTTATTGCCACTAATAATCTCCGCGACACGGCTGCCATCGCCAGCGCACGTGCCGCCGAGCTTTATGGTTTAAATATATTAGCAGATGGAATACAAGATGATCCAAGTAACGTGACCCGATTTGTTATGCTAGCGAGAGAACCAATAATTCCAAGAACGGATCGTCCATTTAAAACGAGTATTGTTTTTGCGCATGATAAAGGAACTTCAGTGCTTTTTAAAGTACTTTCAGCTTTTGCGTTTAGGAATATTAGTTTAACTAAGATTGAATCAAGGCCTCATCGTAACCGTCCGATTAGACTTGTTGATGATGCTAATGTCGGAACTGCTAAGCATTTTGAGTATTTgttttatgttgattttgaaGCTTCTATGGCTGAAGTTAGGGCACAAAATGCGTTGGCTGAAGTTCAGGAGTTCACGTCTTTTTTAAGAGTTTTGGGTAGTTACCCTATGGATATGACACCATGGACACCCTCTAGaggTTTTAATCTTCTGATTCTTGGAGTAATAGGTTTCAATAATTCGAGTTCAACTACAAGGGAGAACAACAACTCGGTCCCCTATATCTGTGATCGGAAGAAGGCTGaaggctga 1389 0.442 MHTLSPPPSSNTLNFNHITRPRLIPNRFNPTRISIKCAYGLEQGSYGFGSSRADFQSSCAILSSKVASQEKPSAAADNVAAINGHKTNITDLQLVPIGNIGGGEIEAVSKPLLSKPLTISDLAPAPMHGSSLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGIRKEYLTRVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEFIATNNLRDTAAIASARAAELYGLNILADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWTPSRGFNLLILGVIGFNNSSSTTRENNNSVPYICDRKKAEG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04679 462 Pfam Prephenate dehydratase 134 312 IPR001086 GO:0004664|GO:0009094
Tsu02g04679 462 ProSitePatterns Prephenate dehydratase signature 1. 286 308 IPR018528 GO:0004664|GO:0009094
Tsu02g04679 462 ProSiteProfiles Prephenate dehydratase domain profile. 133 310 IPR001086 GO:0004664|GO:0009094
Tsu02g04679 462 ProSitePatterns Prephenate dehydratase signature 2. 350 357 IPR018528 GO:0004664|GO:0009094
Tsu02g04679 462 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 27 425 - -
Tsu02g04679 462 Gene3D - 317 418 - -
Tsu02g04679 462 Gene3D - 127 216 - -
Tsu02g04679 462 SUPERFAMILY Periplasmic binding protein-like II 133 316 - -
Tsu02g04679 462 Gene3D - 217 298 - -
Tsu02g04679 462 PANTHER AROGENATE DEHYDRATASE 27 425 - -
Tsu02g04679 462 CDD ACT_CM-PDT 322 415 - -
Tsu02g04679 462 ProSiteProfiles ACT domain profile. 324 415 IPR002912 -
Tsu02g04679 462 CDD PBP2_Ct-PDT_like 131 312 - -
Tsu02g04679 462 SUPERFAMILY ACT-like 305 417 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04679 Tsu-Chr2 55832795 55836212 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04679 K05359 - gmx:100797636 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04679 02 55832795 55836212 Tsu02g04679 02 55832795 55836212 ECH
Tsu02g04679 02 55832795 55836212 Tsu02g03730 02 42176274 42177841 PCT