Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04648 ATGCAAATTATGGCGGTTATCTTCATATTAACTGCCGCGTTCTTATCCACGGCGGCGGTTATTTCTGGATCGCCGGCAACTCTTACATTAGAAAGAGCTTTTCCATCGAATCATGGAATTGAGTTGAATCAGCTAAAAGCTAGAGACTTATTAAGAAATCGGAGAATTTTACAGTCTTCAAATGGTGTTGTTGATTTCGATGTTCATGGTACCTTTGATCCTTTCCAAGTTGGGCTATATTTTACAAAGGTGCAGTTGGGTACTCCCCCGGTTGAATTTTACGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGCAGTTCTTGCAGTGGTTGTCCACAGACAAGTGGGTTGCAGATTGAACTCAACTTTTTCGATCCTGGGCATTCGTCAACATCATCATTAATCTCTTGTTCTGACCGAAGGTGCAACAGCGGAATACAATCATCAGATGCAACCTGTTCAAGTCAGAACAATCAGTGCTCTTACACTTTCCAGTATGGAGATGGTAGTGGAACATCAGGCTATTATGTGTCAGATACGATGCATTTGGATACTATTTTTGAAGGATCTGTGACTACAAATTCTTCAGCTCCAGTAGTTTTCGGTTGTAGTAACCAACAAAGTGGAGATTTGACAAAATCTGACAGAGCAGTTGACGGTATATTTGGATTTGGTCAACAGGAAATGTCTGTGATCTCTCAGCTTTCCTCACAAGGGATTGCTCCTAGAGTATTCTCACATTGCCTTAGAGGAGATAGCACTGGTGGAGGAGTATTGGTTCTTGGTGAGATTGTCGAGCCTAACATAGTTTATACTCCACTTGTTCCATCACAGCCTCATTACAACTTAAATCTACAGAGCATCTCTGTGAATGGCCAGGCATTGCAAATCGATTCATCAGTTTTTGCAACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCATATCTTGCAGAAGAGGCTTATGATCCCTTTGTTAATGCGATTACAGCTACGATACCACAATCTGTACGCACTGTTGTTTCTAGAGGAAATCAGTGTTTCTTAATTACTAACAGTGTCACCGACATTTTCCCTCAAGTGAGTCTAAACTTTGCTGGTGGTGCATCACTGGATTTAAGACCGCAGGACTACCTTATTCAGCAGAATTCTATTGGTGGTGCAGCAGTGTGGTGTATTGGCTTTCAGAAAATCCAAGGTCAAGGAGTCACAATTCTTGGAGATCTCgtattaaaagataaaattgttgtTTATGATCTGGCCGGTCAACGCATTGGATGGGCTAACTATGACTGTTCTTTGTCGGTTAATGTCTCTGCAGCAACCGGCACTGGCAGAAGTGAATTTGtgaatgctggagagataagtgGAAGCACTTCTTTACATGATGGACTTAAGTTGTCAAAGACAGGGTTTTTGGCTTTCTTTGTAACCTTGATTTGCTGCTTTGTGtttttatag 1482 0.4055 MQIMAVIFILTAAFLSTAAVISGSPATLTLERAFPSNHGIELNQLKARDLLRNRRILQSSNGVVDFDVHGTFDPFQVGLYFTKVQLGTPPVEFYVQIDTGSDVLWVSCSSCSGCPQTSGLQIELNFFDPGHSSTSSLISCSDRRCNSGIQSSDATCSSQNNQCSYTFQYGDGSGTSGYYVSDTMHLDTIFEGSVTTNSSAPVVFGCSNQQSGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLRGDSTGGGVLVLGEIVEPNIVYTPLVPSQPHYNLNLQSISVNGQALQIDSSVFATSNNRGTIVDSGTTLAYLAEEAYDPFVNAITATIPQSVRTVVSRGNQCFLITNSVTDIFPQVSLNFAGGASLDLRPQDYLIQQNSIGGAAVWCIGFQKIQGQGVTILGDLVLKDKIVVYDLAGQRIGWANYDCSLSVNVSAATGTGRSEFVNAGEISGSTSLHDGLKLSKTGFLAFFVTLICCFVFL 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04648 493 PRINTS Pepsin (A1) aspartic protease family signature 86 106 IPR001461 GO:0004190|GO:0006508
Tsu02g04648 493 PRINTS Pepsin (A1) aspartic protease family signature 313 324 IPR001461 GO:0004190|GO:0006508
Tsu02g04648 493 PRINTS Pepsin (A1) aspartic protease family signature 411 426 IPR001461 GO:0004190|GO:0006508
Tsu02g04648 493 Gene3D Acid Proteases 267 445 IPR021109 -
Tsu02g04648 493 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 456 - -
Tsu02g04648 493 ProSiteProfiles Peptidase family A1 domain profile. 80 435 IPR033121 -
Tsu02g04648 493 Pfam Xylanase inhibitor C-terminal 283 435 IPR032799 -
Tsu02g04648 493 SUPERFAMILY Acid proteases 75 442 IPR021109 -
Tsu02g04648 493 Gene3D Acid Proteases 61 266 IPR021109 -
Tsu02g04648 493 PANTHER ASPARTYL PROTEASES 7 456 IPR001461 GO:0004190|GO:0006508
Tsu02g04648 493 CDD pepsin_A_like_plant 80 439 IPR034161 -
Tsu02g04648 493 Pfam Xylanase inhibitor N-terminal 80 265 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04648 Tsu-Chr2 55483519 55488206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04648 54 440 Miscellaneous Gene Families AT1G44130 27.861 6.15e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04648 - K00924 gmx:100791299 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04648 02 55483519 55488206 Tsu02g04648 02 55483519 55488206 ECH
Tsu02g04648 02 55483519 55488206 Tsu02g03694 02 41673259 41677689 PCT