Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04570 ATGACTACTGCAAGCAGACTCAAATCTGTCGATTTTTACAGAAAAATCCCAAGAGATTTAACTGAGGCATCATTATCTGGAGCAGGGTTATCCATAGTAGCAGCTCTCGCCATGGTGTTTTTATTTGGAATGGAACTTAGTGAATATTTATCTGTGACCACCTCTACATCTGTGATTGTTGACAAGAGTTCTGATGGGGACTTTTTAAGGATAGATTTCAATTTCAGTTTTCCTGCACTCTCATGTGAGTTTGCGTCGGTCGATGTGAGTGATGTGCTGGGAACAAACAGGCTGAATCTAACAAAAACAGTTCGCAAGTTTACTATTGATTCAAATTTAAGACCCACGGGGTATGAGTTTCAATCACGCCCGGCTACCAACGTCATTAAGCATGATGAAAAAGTGGATGAAGAATCCCTTGAAGGTGCTTTTGTATTCACGTCggacaattttgataaatatgCTCATCAATTTCCGATTACAGCTGTAAATTTTTATGCTCCTTGGTGTTACTGGAGTCAACGCTTGAGACCTTCATGGGAGAAGGCAGCTAAAATAATAAGAGAAAGaTATGATCCGGAAATGGATGGTCGAATATTTTTGGGGAAGGTAGATTGCACTCAAGAAGCAGACTTGTGCCGGAGGCATCACATACAAGGGTATCCGTCCATTCGTATCTTTCGTAAAGGAAGTGATATCAGAAGTGATCACGGACATCATGAACATGAGTCCTATTATGGAGATCGTGATACAGATAGCCTTGTTCAGACAATGGAGAATTTAATAGCATCTCTCCCTTCAGAGTCTCAGAAGCTAGCTTTGGAGGATAAATTAAATGTTGAGAATGCAAAAAGAGCAGCACCATCAGCTGGGGGATGTCGAATCGAAGGATATGTACGTGTCAAGAAGGTTCCAGGAAACTTGATCGTCTCAGCAAGATCTGATGCCCATTCCTTTGATGCGTCTCAAATGAACATGTCGCATGTCGTACACCATTTATCTTTTGGAAGGAAATTGACCCCCAGGGCTATGAGTGATCTCAAGCGTTTGATACCTTATATTGGTAACAGCCATGACAGGCTGAATGGTCTGTCATTCATCAATGAACGTGATTTAGGAGCAAATATTACTATGGAGCATTACCTTCAGATAGTTAAAACAGAAGTGATTACTAGAAAAGATTATCAATTAGTTGAGGAGTATGAGTACACAGCACATAGCAGTGTAGCACACAGTTTACACATTCCTGTTGCGAGGTTCCATCTCGAGCTTTCCCCCATGCAGCAGGTCTTGATAACAGAACAGCAGAAGTCTTTTTCACATTTTATTACAAACGTCTGTGCTATTATTGGGGGTGTTTTCACGGTAGCTGGAATTGCGGAATCGATTTTGCACAACACTATTAGGCTAATGAAAAAAGTTGAGCTGGGCAAGAATTTTTGA 1443 0.4054 MTTASRLKSVDFYRKIPRDLTEASLSGAGLSIVAALAMVFLFGMELSEYLSVTTSTSVIVDKSSDGDFLRIDFNFSFPALSCEFASVDVSDVLGTNRLNLTKTVRKFTIDSNLRPTGYEFQSRPATNVIKHDEKVDEESLEGAFVFTSDNFDKYAHQFPITAVNFYAPWCYWSQRLRPSWEKAAKIIRERYDPEMDGRIFLGKVDCTQEADLCRRHHIQGYPSIRIFRKGSDIRSDHGHHEHESYYGDRDTDSLVQTMENLIASLPSESQKLALEDKLNVENAKRAAPSAGGCRIEGYVRVKKVPGNLIVSARSDAHSFDASQMNMSHVVHHLSFGRKLTPRAMSDLKRLIPYIGNSHDRLNGLSFINERDLGANITMEHYLQIVKTEVITRKDYQLVEEYEYTAHSSVAHSLHIPVARFHLELSPMQQVLITEQQKSFSHFITNVCAIIGGVFTVAGIAESILHNTIRLMKKVELGKNF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04570 480 ProSiteProfiles Thioredoxin domain profile. 114 263 IPR013766 -
Tsu02g04570 480 CDD PDI_a_family 145 258 - -
Tsu02g04570 480 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 480 IPR045888 -
Tsu02g04570 480 Pfam Endoplasmic reticulum vesicle transporter 286 459 IPR012936 -
Tsu02g04570 480 Gene3D Glutaredoxin 130 288 - -
Tsu02g04570 480 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 97 IPR039542 -
Tsu02g04570 480 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 1 480 - -
Tsu02g04570 480 SUPERFAMILY Thioredoxin-like 145 261 IPR036249 -
Tsu02g04570 480 Pfam Thioredoxin 145 243 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04570 Tsu-Chr2 54716689 54723908 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04570 - - gmx:100806869 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04570 02 54716689 54723908 Tsu02g04570 02 54716689 54723908 ECH