Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04557 ATGTGGTCAGAAGCTTTACACATGTTTCTTCCTGATATAGCAAATATGGACCAACACACAAATTTGAGGTCAAGTGTTGATGGCTTTGTAAGAGCAGTTAGCCCTCTAGCAGAGAGCTTGGTGCAAATTCTAGCTGAAGAACTGAACATCAAATTCAGTTATTTCCAACATAATTGTTCAGCAAATACTTGTTATCTTCGGTTGAATAGATATCCAACATGTCCATTCCCTTCAAAGATTGTTGGTCTTTTACCTCATGAAGATCCTAGTTTCTTTACTATAGTTCATCAAGATCACATTGAAGGATTGCAATTGATGAAAGATGGAAATTGGATTAGTGTTAAACCTAATTCTCAAGCTCTCATTGTTAATATTGGAGATTTGTTCCGGGCACTAAGCAATGGAGTGTACACAAGTGTTAAACATCGAGTGATTGCTGCTGAGAAAGTTGAAAGATTTTCAGTGGCATTTTTCTATGGTCCTTCCATTGATGCAGTGATAGAGAGCTATGCCACCCCACCACTTTACAGAAAATTTACCTTTGGAGAGTACCAAGAGCAAACTATGAAAGATCTTAAGGAAGCTGGTGAAAAAGTGGGGCTTTCTAGGTTGTATGTCATATTATTTAAATGTGTGTTCATAAGTTCAAGTGATGAATCAAACAAAGATGATAGCCTTAATGAAGTGGAGACTGTACCAGAGGTTGGAGAACCATCCAATAGACCTCAGAGAACCAGACAAGTTCCAAACAGGTTGAATGATTGTGAAATCACTTCTGATAATGCAGTAAATGATGAAGGTGACATTATTCATTTTGCATTATTAGTAGACTCTGAACCTATTGATTACAAAGATGCTTTGAAAAATAGTGTATGGAAGAGAGCTATGGAGGAAGAGCTTCAGTCAATAGAGAAAAACAAGACTTGGAAGCTAGTTAACTTGCTAGACAAGAAAAAGAATATAGATGTGAAGTGGGTGTTCAAAGTCAAATTGAACCCTGATGGCACAATTTCAAAGCATAAAGCAAGAATTGAAACTGTGAGACTTGTGGTTGCTCTGGCTTGTAAGAACAGATGGTCACTCTATCATTTAGATGTGAAATctgcattcttaaatggtccACTTGAAGAGGAGGTGTATGTGTCACAACCCCCAGGTTTTGAAATTCATGGCAAAGAGAATATGGTGTACAAGTTGCATAAGGCACTATATGGAttgaagcaagctccaagagcttggaacaAGAGGATTGATGAATTTCTGATCCAGATTAGATTCAAGAAATGTGCTTCAGAGTTTGGTGTATATGTGCAAAGCCTTAAAAGTGAAGAACTCATCATAATTTGTCTATATGTAGATGATTTGCTCATAACTGGAAGTGTAAAATCGGGAATTGAAGATGTGAAGAGCAAACTcaaaagtgaatttgagatgactGACCTAGTTAGTGTGATTAGCAAATTCATGCAAGATCCTAGAAAGCCTCATTTGATTGCTGCAAAGAGGATACTTAGATATCTCATAGGTACACAAGATTATAGTTTGATGTTTCCTTGTGGCACAAGCAATGAAGGGTGTACTCTAGTGGGATATTCTGATAGTGATTGGTGTGGAGACATAACTGATAGAAAGAGCACATCAGGCTATGTTTTCAAGTTCAACAATGTTGCAATTTCCTGGTGTACAAAGAAGCAACCAGTTACTGCCCTCTCTTCTTGTGAGGATGAGTATATTGCAAGGAGCTTTGCAACATGTCAAGCAATGTGGCTTGATTCAGTGATGAAGGAACTGAAGTTTGAACCTGTGAAACCTTTAGTGCTCAGAATTGATAACAAGTCTGCTATAAGCCTTGCTAAGAATCCAGTTGCTCATGGAAGAAGCAAGCATATTGACACAAGGTTTCATTTCATCAGAGAACAGGTGACAAATGGTTTGGTGGAGATACAATATTGCCCGACAGAAGTTCAATTGGCTGATGGTTTTACTAAAGCAGTGAAACTTGAGAGATTTGAGTTTCTAAGGAAACAACTTGGTATTTGCTGTGTGAAGTAG 2052 0.365 MWSEALHMFLPDIANMDQHTNLRSSVDGFVRAVSPLAESLVQILAEELNIKFSYFQHNCSANTCYLRLNRYPTCPFPSKIVGLLPHEDPSFFTIVHQDHIEGLQLMKDGNWISVKPNSQALIVNIGDLFRALSNGVYTSVKHRVIAAEKVERFSVAFFYGPSIDAVIESYATPPLYRKFTFGEYQEQTMKDLKEAGEKVGLSRLYVILFKCVFISSSDESNKDDSLNEVETVPEVGEPSNRPQRTRQVPNRLNDCEITSDNAVNDEGDIIHFALLVDSEPIDYKDALKNSVWKRAMEEELQSIEKNKTWKLVNLLDKKKNIDVKWVFKVKLNPDGTISKHKARIETVRLVVALACKNRWSLYHLDVKSAFLNGPLEEEVYVSQPPGFEIHGKENMVYKLHKALYGLKQAPRAWNKRIDEFLIQIRFKKCASEFGVYVQSLKSEELIIICLYVDDLLITGSVKSGIEDVKSKLKSEFEMTDLVSVISKFMQDPRKPHLIAAKRILRYLIGTQDYSLMFPCGTSNEGCTLVGYSDSDWCGDITDRKSTSGYVFKFNNVAISWCTKKQPVTALSSCEDEYIARSFATCQAMWLDSVMKELKFEPVKPLVLRIDNKSAISLAKNPVAHGRSKHIDTRFHFIREQVTNGLVEIQYCPTEVQLADGFTKAVKLERFEFLRKQLGICCVK 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04557 683 CDD RNase_HI_RT_Ty1 529 665 - -
Tsu02g04557 683 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 1 199 - -
Tsu02g04557 683 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 1 199 - -
Tsu02g04557 683 SUPERFAMILY Clavaminate synthase-like 2 191 - -
Tsu02g04557 683 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 306 489 IPR013103 -
Tsu02g04557 683 Gene3D - 1 203 IPR027443 -
Tsu02g04557 683 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 60 161 IPR005123 -
Tsu02g04557 683 SUPERFAMILY DNA/RNA polymerases 305 635 IPR043502 -
Tsu02g04557 683 Pfam 2OG-Fe(II) oxygenase superfamily 66 161 IPR044861 -
Tsu02g04557 683 MobiDBLite consensus disorder prediction 218 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04557 Tsu-Chr2 54551861 54560450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04557 474 663 Receptor kinase-like Gene Family AT4G23160 35.602 4.53e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04557 - K04125 gmx:100790757 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04557 02 54551861 54560450 Tsu02g04557 02 54551861 54560450 ECH