Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04553 ATGGAGTCCATAATTGGTCGGGCTCTCGAATACACTCTCAAGTATTGGCTCAAATCATTCACCAGAGATCAATTCAAACTGCAAGGCCACACTGTTCGTCTTTCCAATTTAGATATCGACGGTGATGCTTTGCATTCTAGTGTTGGATTACCGGCGGCGTTGAATGTTGCATCTGCTAAAGTTGGGAAACTTGAGATAACGcTTCCGTCGGTGAGTAATGTGCAAACGGAACCAATTGTTGTGCAAATTGATAAACTTGATCTTGTTCTTGAAGAGAATTCTGATTTTGATGCATCTTTGAATCCAAATAGTTCTGCGCCTTCAGCTCCGCCTGCCAAGGGTAGCGGTTATGGTTTTGCTGATAAGATTGCAGATGGCATGACTATACAAATTCATACTGTTAATTTATTACTTGAAACTCGCGGAAGTTCTCGTCGCCAAGAGGGAGCAACATGGGCACCACCTATGGCATCTATGACTATACGCAACCTTATGATGTATACCACAAATGAAAACTGGCAGgtTGTAAATCTTAAGGAAGCTCGGGAGTTCTCCAGTAACAAAAAGTTCATATATGTCTTCAAAAAACTGGAATGGCAATCTTTGTCTATTGATCTTTTGCCGCATCCAGACATGTTCGCAGATGTTGAAGAGGGATCAAACCTGAGGGATGATGATGGCGCAAAAAGAGTTTTCTTTGGAGGAGAGCGTTTTATAGAAGGAATATCAGGAGAAGCATATATCACAATTAAGAGAACTGAATTGAACAGTCCTCTTGGACTTGAGGTTCAATTGCACATCAATGAAGCTGTTTGCCCTGCGTTAAGTGAGCCAGGACTGCGTGCACTTCTTCGCTTCATGACAGGAGTATATGTCTGTCTAAACAGGGGTGATGTTGATTTGAAGGCTCAGCAGCGATCCACTGAAGCAGCTGGGTGTTCTCTTGTATCGATTGTTGTAGATCATATATTTCTTTGCATTAAAGATGCTGAATTCCGGCTGGAGTTTTTGATGCAGTCCCTCTTCTTCTCTAGGGCGAGTCTTTCTGAAGTAGATAACGACAAGAACTTGACCAAGATTACAATTGGTGGATTATTTTTGAGGGACACCTTTTCTAGCCCTCCATGTACTTTAGTGCAACCATCAATGCTAGCTGTCACAGGAGATGCTTTTCATGTGCCTGAATTTGCTAGAAGCTTTTGCCCACCGATATATCCTCTGGGAGAACAACAATGGCAGTTGACCGAGGGTACCCCTCTAATATGCCTCCATGCTCTCCAGATCATACCTTCTCCACTTCCACCATCCTTTGCTTCTCAAACTGTTATTGACTGTCAGCCACTTATGATTCACCTCCAAGAAGAATCATGCTTGAGGATATCCTCTTTTTTAGCTGATGGTATTGTTGTCGGTCCTGGTGACATTTTACCAGATTTTTCAGtgaaatcttttatttttaatctcaaGGGATTGGATCTTACAGTTCCTTTTGACAAGGACAAATTGGATATTTCTAGAAGTGATATGGACAGCACAACCCATACCTCCTTTACTGGAGCAAGGCTTCATATTGAAagccttttatttttagattcacCTTCATTGAAACTAAGAATGCTGAACCTTGAGAAGGATCCTGCTTGCTTTTGTCTTTGGGAAGGTCAACCAATTGATGCTACCCAGAAGAAGTGGACAGCCAAAGCATCCCAGCTTACTTTGTCTCTGGAAGCATGCACGGGTACAAATGGACGTCAGACTGCAGGATTGTGGAGATGTGTTGATCTGACAGAAGCTTGCATTGAAGTAGCCATGGCAACAGTTGATGGAAGCCCGTTGTTAAACATTCCTCCTCCAGGGGGTATTGTCAGGGTTGGAGTTGCTTGTGAACAGTATTTGTCCAACACTTCTGTTGAGCAATTATTTTTTGTCCTAGATCTTTACGGTTATTTTGTAAAAGTTAGTGAAATGATGGCAACAGCTGGAAAAAGGAAACAACTGGAGGACGGTGGGGAAAAATCTTTCAGTGGAACTGGAAAGCTTTTGGACAAGGTTCCTAGCGACACTGCCGCGAGTTTAGCAGTGAAAGATCTCCAACTTCGATTCCTAGAGTCTTCATCAATGAATGTGGAGGGACTGCCATTAGTGCAATTTGTTGGAGATGATCTGTTTACAAGTGCTACTCATAGAACCCTCGGTGGGGCTATTGTTGTTTCATCTTCTCTACGTTGGGAGAGTGTTGAGATAAGTTGTGTGGATGCTGAGGGGAAATTGGCATGTGAATCCTTGAGTTCTAGCATAAATGCTCCTTCACCGAGTGATAATGGATATCCGCAACTAAGAGCTGTATTCTGGGTGCATAAGAACGAGAGACATTTAATGGATGGAAATGCTCGTTCTTTCCCTTTTCTGGACATAAGGACAGTTCATGTCATACCATTACATGAACAAGACTTGGAGTCTCATAGTTTAAATGTATCGGCTTTTGTATCTGGTGTTCGTCTTGGTGGGGGAATGAACTATACTGAAGCCGTACTACATAGATTTGGAATACTTGAGCCTGATGGAGCTCCTGGGAAGGGTCTATGTAAAGGTTTGGAAAACTTACAAAAGGGACCATTGTCAAAACTTTTTAATTCAACTCCTATGATCGTTGATAATTCAGAAGATGTTCAAAACACAGGGGAAGGGAAAGAAACAGGTTTTCCCCACTTGAAGAAGCCAGATGATGTGGATGTAACTATAGAATTGAGAGACTGGTTATTTGCTCTTGAAGGTGCAGAGGATATGGCTGAAAAGTGGTGGTTCTCCAGTCATGAAGATGAAGGAAGAGAAGAGAGGTGTTGGCACACATCTTTCCATAGTTTACAAGTAAATGCAAAAAGTAGCCCAAAGAATGTTTCCggtggaaaaggaaaaatacataGAATACAGCATCATCCAGTAGAACTGGTTACGGTTGGAGTTCAAGGGCTGCAAATCCTGAAGCCTCGTATCCAAAAAAGCATTCCTTCATCAGTGGTAATTGGCAATGGGGTTAAGGAATTTACTGACACAGTTGGAGGTGTTGGCCTTGAAGTTCGATTGATATTATGTGAGGagaatgttgatgatgaaacaACTAATTGGGAAGTGGAAAATCTAAAATTCTCTGTAAAACAGCCGGTTGAGGCAGTTGTAACGAAGGATGAGCTTCAGCACCTTACATTTTTGTGCAAATCTGAAATTGATTCAATTGGCCGGATAACTGCTGGAATTATACGGTTGCTTAAGTTAGAAGGCTCTGTTGGTCAGTCTGTAATAGATCAACTAGGCAACCTAGGAAGCGAAGGCATTGACAAGATATTCTCTGGTGAAAAGTTTAGTAGAGATGGTAGTGTTGATAGTAGAGGGCTTTCTCCATTACCAAACCTGATAAGCGAAGAGCCAAACAAAACTCCTGAACAGACATTAACTTTGCTTGAGGAAGCAGTTATGGATTCACAGGCTAAAATCAATGGTTTAATTAGTGATGTTGGTATTTCAGAGTCTTCTTCCTCTCAACACCTTACCATCGTCAAACTGAGTCAAAAGATTGAAAGTATGCAGGGCTTATTGATGCAATTGCGGAATCAACTTTAA 3618 0.4104 MESIIGRALEYTLKYWLKSFTRDQFKLQGHTVRLSNLDIDGDALHSSVGLPAALNVASAKVGKLEITLPSVSNVQTEPIVVQIDKLDLVLEENSDFDASLNPNSSAPSAPPAKGSGYGFADKIADGMTIQIHTVNLLLETRGSSRRQEGATWAPPMASMTIRNLMMYTTNENWQVVNLKEAREFSSNKKFIYVFKKLEWQSLSIDLLPHPDMFADVEEGSNLRDDDGAKRVFFGGERFIEGISGEAYITIKRTELNSPLGLEVQLHINEAVCPALSEPGLRALLRFMTGVYVCLNRGDVDLKAQQRSTEAAGCSLVSIVVDHIFLCIKDAEFRLEFLMQSLFFSRASLSEVDNDKNLTKITIGGLFLRDTFSSPPCTLVQPSMLAVTGDAFHVPEFARSFCPPIYPLGEQQWQLTEGTPLICLHALQIIPSPLPPSFASQTVIDCQPLMIHLQEESCLRISSFLADGIVVGPGDILPDFSVKSFIFNLKGLDLTVPFDKDKLDISRSDMDSTTHTSFTGARLHIESLLFLDSPSLKLRMLNLEKDPACFCLWEGQPIDATQKKWTAKASQLTLSLEACTGTNGRQTAGLWRCVDLTEACIEVAMATVDGSPLLNIPPPGGIVRVGVACEQYLSNTSVEQLFFVLDLYGYFVKVSEMMATAGKRKQLEDGGEKSFSGTGKLLDKVPSDTAASLAVKDLQLRFLESSSMNVEGLPLVQFVGDDLFTSATHRTLGGAIVVSSSLRWESVEISCVDAEGKLACESLSSSINAPSPSDNGYPQLRAVFWVHKNERHLMDGNARSFPFLDIRTVHVIPLHEQDLESHSLNVSAFVSGVRLGGGMNYTEAVLHRFGILEPDGAPGKGLCKGLENLQKGPLSKLFNSTPMIVDNSEDVQNTGEGKETGFPHLKKPDDVDVTIELRDWLFALEGAEDMAEKWWFSSHEDEGREERCWHTSFHSLQVNAKSSPKNVSGGKGKIHRIQHHPVELVTVGVQGLQILKPRIQKSIPSSVVIGNGVKEFTDTVGGVGLEVRLILCEENVDDETTNWEVENLKFSVKQPVEAVVTKDELQHLTFLCKSEIDSIGRITAGIIRLLKLEGSVGQSVIDQLGNLGSEGIDKIFSGEKFSRDGSVDSRGLSPLPNLISEEPNKTPEQTLTLLEEAVMDSQAKINGLISDVGISESSSSQHLTIVKLSQKIESMQGLLMQLRNQL 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04553 1205 Coils Coil 1184 1204 - -
Tsu02g04553 1205 PANTHER UNCHARACTERIZED 1 1204 IPR026728 -
Tsu02g04553 1205 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1204 - -
Tsu02g04553 1205 Pfam N-terminal region of Chorein or VPS13 1 97 IPR026854 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04553 Tsu-Chr2 54520913 54532153 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04553 - - gmx:100803142 1954.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04553 02 54520913 54532153 Tsu02g04553 02 54520913 54532153 ECH
Tsu02g04553 02 54520913 54532153 Tsu02g03058 02 33897433 33908549 PCT