Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04550 ATGAGGAATGATGGacataaacaacaacaacttctTCATCACCAAGGTGGTGTTGGAGTTGGGGTTGGTGGTGGTGGAAGAACAAATGGTTTCATACCTAGCTCGTTTCGCGCTATCTCAAGTTACTTGAGGATTGTTTCCTCGGGTGCTTCCACGGTTGCACGCTCTGCTGCATCGGTTGCTTCATCGATTGTTGATAGGGAAGATGTTGCTGATCATGATCAGGTTATTTGGGCCGGTTTTGATAAGTTGGAGGGTGAGGGCGATACTGTTCAACAAGTACTTCTTCTAGGCTATCGGTCTGGCTTCCAAGTTTGGCATGTTGATGAATCAAATAATGTCCGGGACATGGTTTCCAAACACGACGGTCCAGTTTCTTTTATGCAAATGGTTCCAAATCCAATTGCATCAAAAAAATCAGAAGACAAGTTTGCAAGCAGCCGCCCGTTGTTGGTAGTTTGTGCCGCCGATGGACTCTTTGGAGGAGGAAGCAATACTAAGGATGGATTGACTGGTCCTCTCAATGGAACTTCAAACTCTCATGATCAAATGAATGGCAACTACATGCCAACTAGTGTTCAGTTTTATTCTATGAAATCCCATTCATATGTTCATGTAATGAAGTTTAGATCCGTTGTTTATTCCGTAAGGTGCAGTTCTCGAATAGTTGCTGTTTCTCAATCCACTCAGATACATTGTTTCAATGCTACGACATTAGAAAGGGAATATACTTTACTTACTAATCCAATAGTGATGAGTTGTCCTGGTTCCGGAGGCATAGGATACGGACCACTTGCGGTGGGTCCAAGATGGCTGGCTTATAGTGGAAGTCCAGTTGCAATCTCCACTTCCAGCCACGTCAGCCCACAGCATTTGACACCTTCTGCAAGCTTTCCTGGTTTTTCTTCAAACGGAAGCTTGATTGCGCACTATGCCAAAGAATCAAGCAAGCATCTTGCTACTGGGATTGTTACCCTTGGAGATATGGGATATAAGAAACTTTCTAGATACTGTTCTGAAAACAATGGTTCATTACAATCTGTAAATTCTGGATCAAAGGTCAATGGAAACATTAACGGCCATTCGGCTGATTTAGATAACATTGGAATGGTCATTGTTAAAGATATTGTCACTAAAAACGTTGTTGCCCAATTTCGAGCACACAAAAGTCCGATTTCAGCTTTATGCTTTGATCCTAGTGGCACCCTATTAGTGACCGCTTCTGTTCAGGGTCATAACATAAATGTTTTTAAGATAATGCCTATGCGTGAGAATTCGTCTGATGCCGGTCCTTCTCACGTTCATTTATACAGGTTGCAACGCGGTTTTACAAATGCGGTTATACAGGATATTAGTTTTAGTGACGACAGCAAGTGGATTATGATTAGTTCCTCGAGAGGCACTAGTCATCTATTTGCAATAAATCCTCAAGGAGGATATGTAAATATTCAGTCGAATGATGACACAAAAAATAGTGGATTAAGCACTACGACTAATCAAGTAGTTCGCCGGGATACTATGTCAGCTGTACAAATGCCTAAACAGCAAAGCCTGTATGTAGCCGGCCCTCCAATCACACTTTCTGTAGTAAGCAGAATTAGGAATGGAACTAACGGTTGGAGAGGTACGGTAAGTGGTGCTGCTGCAGCTGCAGCCGGTAGGAAGAGTTCCCTTTCTGGGGCTATTGCTTCGTCTTTCCGTAATTGTAAAGGAAGTGGATCGGTATACGGTGAAGGGAACAATTCCAAGGCAAATTATCACTTGTTGGTCTTTTCACCTAGTGGATCGATGATTCAATATGCTCTTCGGACAATAAATGGTCAAGATTCAGCTGTTGTTTCTGGATTATCTCCTGCTTATGAATCTAATCCACAGGCCGATGCAAGATTAGTAGTTGAGGCCATGCATAAATGGAATATATGTTATAGTCATAGTCGCAGAGAGCGAGAAGATAATGTTGACATATATGGTGAAAATGGAATTTCAGACAGCAGCAAAATATATCCGGAGGAAGTAGAGGAGAACATCATTAATCCTAATCCTAAAATAAACAACGGTGTCATGAAACTGAATCCCTCTCTCAAGGAAGAGCATCATTTGTATATATCAGAAGCTGAACTGCAAATGCATCAAACTCAGATTCCATTGTGGGCAAAGCCAGAGATATATTTTAATTCAATGTTGAAAGAGTCCACCATAATGGATGAAGAAGATGCTTTAGGAGGAGAATTTGAGATTGAAAGGATTCCAACTAGCATGATTGAAGCTAGACCAAAAGACTTGGTTCCAATTTTCAACTATATGCAGACTCCAAAATTTCAACAAACAAGGGCTCCTGCTATGGATAGCAAGATAAATGGACAAGTGTTGCATCACGGTTCTGAGCCATATGGAAATGGACATGGAAATGGACGGATATCACCTAGGAGTATTTCGGGATCTCTTGAGGGCATGAATAATTCTGATGATGAAGTTACTGAACATAAAAGTCAAATAGAAGGAACTGAATGGGATAATCATGTGATGCCATCAGAAACTATTGGCTTTGTAAATAAAAATGACACCCTTAAACCAAATACTCAGCAGCATGAGATTGTAAATAATAGAAGAGAGCACTTAAACATGAGGGCTCAGCTCATGCATGTAAATAGCGACAAAAGGCCTGAAGATGAGcatcattttgaagaaaatgaagatgaaTCTGATTGA 2709 0.4053 MRNDGHKQQQLLHHQGGVGVGVGGGGRTNGFIPSSFRAISSYLRIVSSGASTVARSAASVASSIVDREDVADHDQVIWAGFDKLEGEGDTVQQVLLLGYRSGFQVWHVDESNNVRDMVSKHDGPVSFMQMVPNPIASKKSEDKFASSRPLLVVCAADGLFGGGSNTKDGLTGPLNGTSNSHDQMNGNYMPTSVQFYSMKSHSYVHVMKFRSVVYSVRCSSRIVAVSQSTQIHCFNATTLEREYTLLTNPIVMSCPGSGGIGYGPLAVGPRWLAYSGSPVAISTSSHVSPQHLTPSASFPGFSSNGSLIAHYAKESSKHLATGIVTLGDMGYKKLSRYCSENNGSLQSVNSGSKVNGNINGHSADLDNIGMVIVKDIVTKNVVAQFRAHKSPISALCFDPSGTLLVTASVQGHNINVFKIMPMRENSSDAGPSHVHLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGYVNIQSNDDTKNSGLSTTTNQVVRRDTMSAVQMPKQQSLYVAGPPITLSVVSRIRNGTNGWRGTVSGAAAAAAGRKSSLSGAIASSFRNCKGSGSVYGEGNNSKANYHLLVFSPSGSMIQYALRTINGQDSAVVSGLSPAYESNPQADARLVVEAMHKWNICYSHSRREREDNVDIYGENGISDSSKIYPEEVEENIINPNPKINNGVMKLNPSLKEEHHLYISEAELQMHQTQIPLWAKPEIYFNSMLKESTIMDEEDALGGEFEIERIPTSMIEARPKDLVPIFNYMQTPKFQQTRAPAMDSKINGQVLHHGSEPYGNGHGNGRISPRSISGSLEGMNNSDDEVTEHKSQIEGTEWDNHVMPSETIGFVNKNDTLKPNTQQHEIVNNRREHLNMRAQLMHVNSDKRPEDEHHFEENEDESD 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04550 902 Pfam Breast carcinoma amplified sequence 3 522 763 IPR022175 -
Tsu02g04550 902 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 1 871 IPR045142 GO:0006914
Tsu02g04550 902 MobiDBLite consensus disorder prediction 1 21 - -
Tsu02g04550 902 Gene3D - 83 501 IPR015943 GO:0005515
Tsu02g04550 902 MobiDBLite consensus disorder prediction 881 902 - -
Tsu02g04550 902 SUPERFAMILY WD40 repeat-like 93 475 IPR036322 GO:0005515
Tsu02g04550 902 Pfam WD domain, G-beta repeat 382 411 IPR001680 GO:0005515
Tsu02g04550 902 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 1 871 - -
Tsu02g04550 902 SMART WD40_4 432 473 IPR001680 GO:0005515
Tsu02g04550 902 SMART WD40_4 200 235 IPR001680 GO:0005515
Tsu02g04550 902 SMART WD40_4 378 418 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04550 Tsu-Chr2 54489518 54496258 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04550 - - gmx:100784596 1310.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04550 02 54489518 54496258 Tsu02g04550 02 54489518 54496258 ECH