Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04541 ATGGCTGGTAGAGGCAAAACCCTAGGTTCTGGTGCCGCTAAGAAAGCCACCTCAAGGAGTAGCAAAGCTGGCCTTCAATTTCCCGTTGGCCGTATCGCTCGGTTTCTTAAGGCCGGAAAATACGCTGAACGTGTCGGTGCCGGTGCTCCTGTTTACCTTGCTGCCGTCCTTGAATATCTCGCCGCTGAGGTTTTGGAGTTAGCTGGAAATGCAGCAAGAGACAACAAGAAAACAAGAATTGTGCCAAGACATATTCAATTAGCAGTAAGGAATGATGAAGAATTGAGCAAGCTTCTTGGTGATGTTACAATTGCTAATGGTGGTGTTATGCCTAATATCCATAACTTGTTGCTTCCAAAGAAGACTGGTGCTTCTTCAAAAGGTGCTGCTACTGAAGATGATTCTTAG 408 0.4583 MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASSKGAATEDDS 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04541 135 ProSitePatterns Histone H2A signature. 23 29 IPR032458 -
Tsu02g04541 135 CDD H2A 9 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Tsu02g04541 135 PANTHER HISTONE H2A.6 2 132 - -
Tsu02g04541 135 Pfam Core histone H2A/H2B/H3/H4 13 90 IPR007125 GO:0003677
Tsu02g04541 135 SUPERFAMILY Histone-fold 9 123 IPR009072 GO:0046982
Tsu02g04541 135 SMART h2a4 4 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
Tsu02g04541 135 Pfam C-terminus of histone H2A 93 127 IPR032454 -
Tsu02g04541 135 PANTHER HISTONE H2A 2 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Tsu02g04541 135 PRINTS Histone H2A signature 15 37 IPR002119 GO:0000786|GO:0003677|GO:0030527
Tsu02g04541 135 PRINTS Histone H2A signature 44 59 IPR002119 GO:0000786|GO:0003677|GO:0030527
Tsu02g04541 135 PRINTS Histone H2A signature 59 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Tsu02g04541 135 PRINTS Histone H2A signature 73 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Tsu02g04541 135 PRINTS Histone H2A signature 101 119 IPR002119 GO:0000786|GO:0003677|GO:0030527
Tsu02g04541 135 Gene3D Histone, subunit A 1 129 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04541 Tsu-Chr2 54421168 54422254 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04541 K11251 - gmx:100810491 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04541 02 54421168 54422254 Tsu02g04541 02 54421168 54422254 ECH