Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04520 ATGCCTACTTCTCTTGATTATGATCTctcccaaaaaaacaaaaaaattcttgaCTTCATAGAGGATGCTACTTCACATGCAGATGAAATCCAAAAAAATGTCTTAGCTGAAATTCTCTCTCACAATGCAAATGTTGAATATTTGCAAAGACATGGTCTCAATGGTCACACAGATAGTGAAACTTTCAAGAAACTTCTTCCTATCATATCATATGAAGATATCAAACATGATATTAACCGTATTGCTAATGGTGACACTTCTCCAATCCTCACCTCAAATCCCATTTCAAACTTTCTCACTAGCTCAGGCACATCTGGTGGTGAGAGAAAGTTAATGCCAGCAACTGAAGAAGAACTTGAAAGAAGATATTTCCTCTATAGTCTATTAATGCCAATATTTAGTCAATTTGTTCCTGACCTAGAAAAAGGTAAAGGAATGTACCTTATGttcataaaaaatgaatctaAGACTCCAGGAGGTATTAAGGCTAGTCCAGTTCTCACAAACTATTACAAAAGTTCGCATTTTTTAAACAGATCTTATGATCCATACAAAAATTTCACAAGTCCAAATGAAACTGTTCTTTGTCTTGACTCATACCAAAGTATGTATTCACAAATTCTATGTGGTCTTTGTCAAAACAAAGAAGTCCTTCGTGTCGGCGCTGTTTTTGCTTCAGGTCTAATTCGCGCCATTCATTTCCTTGAAAAAAATTGGACACTTTTTTGTAATGATATACGAACAGGAACCCTTAATCTCCTTATCACTGATACTTCGGTGAGAGAGGCGGTGATGAAGATACTTAAACTGGACGAAAATCTTGctaattttattgaatttgaGTGTAGTAAAAATTCTTGGCAAGGGATTATTACTAGGTTATGGCCTAATACTAAGTATGTTGATGTGATTGTGACTGGAGCAATGTCACAATACATTCCTACTTTGGAGTATTATAGTAATGGATTACCACTTGTTTGTACTATGTATGCTTCAAGTGAATGTTACTTTGGTGTTAACCTTAATCCCCTTTGTAAACCTTGTCAAGTGTCTTATACACTTATCCCCACCATGTGCTACTATGAATTTTTACCTGTTAATAGAAGTAATGATCCTCtcaatgagaaagaaaaacaagaattgGTGGACCTTGTTGATGTCAAACTTGGTCAGGAATATGAGCTTGTTGTCACAACTTATGCTGGACTTTATAGGTACAAAGTAGGTGATGTATTGAAAGTGACTGGATTCAAGAACAAGGCACCACAATTCAGCTTTGTGTGTAGAAAAAATGTTGTCCTAAGCATAGAATCAGACAAAACAGATGAAGTTGAGTTACAAAATGCAATGAAAAATGCTATGACACATTTAGTACCATTTGATGCAGATGTAGCAGAGTACACAAGTTATGCAGACACAACAACAATTCCAGGACACTATGTGCTTTATTGGGAATTAAATCTCAAAGGGTCAAAATATATTCCTCCTTGTGTTTATGAAGATTGTTGTTTAACAATTGAGGAATCATTTAATAGTGTTTATCGACAAAGTCGAGTTTCGGATAAATCAATTGGTCCACTTGAGATTAAGATTGTTGAGCAAGGTACATTTGATAAACTTATGGATTATGCAATTAGTATGGGAGCTTCAATTAATCAATACAAGACTTCTAGGTGTGTGAAGTGTGGACCTGTTGTGGAGCTTTTGGAGTCAAGAGTTGTTGCAAAGTATTTTAGTCCTAAATGTCCAAAATGGGTTCCTGGTCATAAGGATTGGAATAATGGGAATTGA 1791 0.3412 MPTSLDYDLSQKNKKILDFIEDATSHADEIQKNVLAEILSHNANVEYLQRHGLNGHTDSETFKKLLPIISYEDIKHDINRIANGDTSPILTSNPISNFLTSSGTSGGERKLMPATEEELERRYFLYSLLMPIFSQFVPDLEKGKGMYLMFIKNESKTPGGIKASPVLTNYYKSSHFLNRSYDPYKNFTSPNETVLCLDSYQSMYSQILCGLCQNKEVLRVGAVFASGLIRAIHFLEKNWTLFCNDIRTGTLNLLITDTSVREAVMKILKLDENLANFIEFECSKNSWQGIITRLWPNTKYVDVIVTGAMSQYIPTLEYYSNGLPLVCTMYASSECYFGVNLNPLCKPCQVSYTLIPTMCYYEFLPVNRSNDPLNEKEKQELVDLVDVKLGQEYELVVTTYAGLYRYKVGDVLKVTGFKNKAPQFSFVCRKNVVLSIESDKTDEVELQNAMKNAMTHLVPFDADVAEYTSYADTTTIPGHYVLYWELNLKGSKYIPPCVYEDCCLTIEESFNSVYRQSRVSDKSIGPLEIKIVEQGTFDKLMDYAISMGASINQYKTSRCVKCGPVVELLESRVVAKYFSPKCPKWVPGHKDWNNGN 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04520 596 Pfam GH3 auxin-responsive promoter 20 561 IPR004993 -
Tsu02g04520 596 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 7 593 IPR004993 -
Tsu02g04520 596 PANTHER - 7 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04520 Tsu-Chr2 54228131 54231055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04520 4 579 EF-hand Containing Proteins AT1G23160 50.256 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04520 K14487 - gmx:100791987 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04520 02 54228131 54231055 Tsu02g04520 02 54228131 54231055 ECH