Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04511 ATGGCTTCACAAAACACTCAACAAGTTCAATTTCAAGACTCATTACCCTTGATGGCAAATAAGCTTGGTGGGGATGGATTAATAGATGAATTATGCAATGGTTTCAATCTTTTAATGGATTCTAACAAAAGGGTTATTACCTTTGAAAGTCTTAAGAAGAATTCAGCTTTATTTGGATTACAAGATTTAAGTGATGAAGATCTTCAATCAATGATTGTTGAAGGTGATTTTGATGGTGATGGTGCTCTTAATCAATTGGAGTTTTGTGTTTTGATGTTTAGACTTAGTCCTGAACTTATGGATGGATCTAAGTTATGGTTGGAAGAAATGCTTCAACAAGAAATGaaagattttttctaa 360 0.3194 MASQNTQQVQFQDSLPLMANKLGGDGLIDELCNGFNLLMDSNKRVITFESLKKNSALFGLQDLSDEDLQSMIVEGDFDGDGALNQLEFCVLMFRLSPELMDGSKLWLEEMLQQEMKDFF 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04511 119 SUPERFAMILY EF-hand 4 92 IPR011992 -
Tsu02g04511 119 Pfam EF-hand domain pair 43 94 IPR002048 GO:0005509
Tsu02g04511 119 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Tsu02g04511 119 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Tsu02g04511 119 Gene3D - 8 118 - -
Tsu02g04511 119 PANTHER CALCIUM-BINDING PROTEIN KIC 4 118 IPR044205 GO:0005509
Tsu02g04511 119 PANTHER CALCIUM-BINDING PROTEIN KRP1 4 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04511 Tsu-Chr2 54100633 54101351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04511 2 114 EF-hand Containing Proteins AT5G54490 61.404 7.32e-47 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04511 K24345 - gmx:100500465 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04511 02 54100633 54101351 Tsu02g04511 02 54100633 54101351 ECH