Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04446 ATGCAAAAATCTTTGGCAATAAGCAGAAACTTATTCAACCATCATAGAAATGCAACTCAAATTATGGCAACTAGATTAATGGAACCAAGTGATGTGTTTCTAAACCATAGAAGCACAGACACAAAGAGAACCGTTGCAACTCAGCTTTATAACAACCTTAGAAAACATGGTATAAACCCTTTCTTGGATGAAAAAAACATGAAACCGGGTGATAAATTGTTTGAGAAGATAAACAATGGAATCATGGAGTGTAAGATTGGTGTAGCGGTCTTTTCGCCTCGTTATTGTGAATCGTATTTTTGTCTCCATGAACTTGCCCTATTAACTGCGCTTAAGAAGAAGGTTATTCCAATATTTTGTGATGTTAATCCTTCTCAATTGCGTGTTGTTAATAATACAAAATGGTCTAAGGAGGAACATAGGAGATTTAGATGGGCTCTTGATGAAGCGAAGCACACCGTTGGACTCACCTACAAGTCTTCAAAAGGGAACTTGTCCGAATTTGTGACTAATGCATCTGAGATAATCATTGGAAGCATGAAAGAACTTGAGAATGAAGATGAGATGATGGATATACACTTGCCAATTCCTGTTTAG 597 0.3685 MQKSLAISRNLFNHHRNATQIMATRLMEPSDVFLNHRSTDTKRTVATQLYNNLRKHGINPFLDEKNMKPGDKLFEKINNGIMECKIGVAVFSPRYCESYFCLHELALLTALKKKVIPIFCDVNPSQLRVVNNTKWSKEEHRRFRWALDEAKHTVGLTYKSSKGNLSEFVTNASEIIIGSMKELENEDEMMDIHLPIPV 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04446 198 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 26 191 - -
Tsu02g04446 198 Gene3D - 27 184 IPR035897 -
Tsu02g04446 198 Pfam TIR domain 31 176 IPR000157 GO:0007165
Tsu02g04446 198 ProSiteProfiles TIR domain profile. 28 176 IPR000157 GO:0007165
Tsu02g04446 198 SMART till_3 29 162 IPR000157 GO:0007165
Tsu02g04446 198 PANTHER COP1-INTERACTING PROTEIN-RELATED 26 191 - -
Tsu02g04446 198 SUPERFAMILY Toll/Interleukin receptor TIR domain 31 155 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04446 Tsu-Chr2 53345630 53346987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04446 19 156 Miscellaneous Gene Families AT1G57830 30.625 1.35e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04446 - - ccaj:109788850 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04446 02 53345630 53346987 Tsu02g04446 02 53345630 53346987 ECH