Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04440 ATGAACAAAACCGTCCATGTTTCATCTTCTCAACAACAACTAGAATCACCACAAGACGATTTCTTCTACGAATCACACGACCGTTTACactcttcttcttgttcttgttctaaTTCCAACTCCGAAGACGAAGACCAACCAGACCAAGAAAACAATAATACTAATTACAATTTTGCCCTGAACAGTTACGATATATGGATCTCtcaaccttcttctgtttccgAACGTCGTTCTCGTTTACTCCAAACCATAGGTTTGTCATCCGACCCTGCTCTTTCACGCGGTAATCCACTTCCACCCTACAATGCCATTTTCCGATCCAAATCTGACGGCAGTTATAACGACAACTTATCATCTCATTCTAACAACTTTCTCTCTCTTGATaactcttcttcatcttcatcttctgtTGTAAATAATAACTGTATTCCCGCTAATTGCGGCGGATCCCCCGCGAAACCACCGTCCGGAAAGAATTCTTATAGAATAACAACAACTCAGTCCGGTGCTGCTGATTTTTCGGCGGAGACGACGACGGCGGTGACGGTTACAGAGGCGGAGATTGTGGTTTCTGGTGAAACGGAGTGTGATGAGATTGAAAGAGGAGAAGAACAAGCTTGTACTATTAGAGATCTTGATAATGGAAAAGAGTTTGTTGTGAAAGAAATTAGAGAAGATGGAATGTGGAATAAAGTGAAAGAAGTTGCTACTGGTAGACAGTTGACTATGGAGGAATTTGAGATGACGGTCGGTCATTCTCCGATTGTGCAGGAGCTTATGCGGCGGCAGAGTCACGAGGATACCGGAGATGGAAATAGTGGtggtagtggtggtggtggtagcGGTGGGATTAATAGTAATGGGAGTATTTCTAAGGGGAAAAAGAAAGGAGGGAGTTGGTTGAAGAGTATTAAGAGTGTAGCTAGTTCAATGGCGGGACATAAGGAACGACGGAGTAGTGATGAGAGAGATACTTCGTCGGAGAAAGGTGGTAGGAGGTCGAGTTCGGCTACTGATGATAGTCAGGATGGTTCATTTCATGGACCGGAGAGGGTGAGAGTGAGGCAGTATGGAAAATCGTGTAAAGAGTTAACTGCATTGTTTAAGAGTCAAGAGATTCAAGCGCATAATGGATCGATTTGGTGTATTAAATTTAGTTTAGATGGGAAATATCTTGCTAGTGCCGGTGAGGATTGTGTGATTCATGTTTGGCAGGTTGTGGAATGTGAGAGGAAAGGGGAGTTGTTGCTTATGGAGAAACAGGAAGATGTTAATGTTAATATGTTGTTTCTTGTTAATGGGTCGCCAGAACCCGCTTTGTTGTCTCCTTTGGCGGATAATCATGCGGAAAGGAAGAGAAAAGGGAGGTCGTCCGTTAGTAGGAAGTCGTTAAGCTTGGACCAGTTTGTGGTCCCTGAAAATGTGTTTGCACTCACTGAAAAACCCATTTGCTCCTTTCAGGGCCATTTACATGATGTGCTTGATCTCTCTTGGTCTAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACAGTACGGTTGTGGCATTTATCTAGCAAGTCTtgtttgaagattttttcacacaGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGTCAAGTTGTTGATTGGATTGATCTTCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGAGCACTAGTTGGTTCATACAAGGGTAGCTGTCATTTATATAATACATCCGAAAATAAATTGCAACAGAAAAGTCAGATCAATCtgcagaacaagaaaaagaaatcaaatcaCAAGAAAATTACTGGTTTCCAGTTTGCCCCAGGAAGTTCGTCAGAAGTACTTATCACATCTGCTGATTCTCGAATTCGTGTTGTTGATAGCATTGATCTGGTTCATAAGTTTAAAGGCTTTCGAAATGCAAGTAGCCAGATTTCAGCCTCCCTCACAGCAAATGGTAAATATATTGTCGCAGCAAGTGAGGATTCCCATGTATACATCTGGAAAAACGAAGCTGATTGCAGGCCTAACAGAAGTAAAGGTGTCACCGTGACACAGTCGTATGAACATTTTCACTGTAAAGACGTGTCAGTAGCCATTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGATACATTTTCTCCAGAACAACCTGAGCATGATAGTAGCAACAACGATGAAATCTCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGGTGTCGAGGGTTCACGAGCTGCTTCAGGTTACCATAGTCCACATCATGCAACCATTGCAAGTGCGACAAATAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTAGCCGCAAGAAATCAAAGCCCCCGTGTCAGTATGGATTTCTCAAATGGGGCAAGTCAAAAAATGTCAGCATGGGGTATGGTGATTGTTACTGCCGGTCTTCGAGGTGAAATTAGAACTTTCCAAAATTTTGGATTGCCACTGCGAATATAA 2583 0.4053 MNKTVHVSSSQQQLESPQDDFFYESHDRLHSSSCSCSNSNSEDEDQPDQENNNTNYNFALNSYDIWISQPSSVSERRSRLLQTIGLSSDPALSRGNPLPPYNAIFRSKSDGSYNDNLSSHSNNFLSLDNSSSSSSSVVNNNCIPANCGGSPAKPPSGKNSYRITTTQSGAADFSAETTTAVTVTEAEIVVSGETECDEIERGEEQACTIRDLDNGKEFVVKEIREDGMWNKVKEVATGRQLTMEEFEMTVGHSPIVQELMRRQSHEDTGDGNSGGSGGGGSGGINSNGSISKGKKKGGSWLKSIKSVASSMAGHKERRSSDERDTSSEKGGRRSSSATDDSQDGSFHGPERVRVRQYGKSCKELTALFKSQEIQAHNGSIWCIKFSLDGKYLASAGEDCVIHVWQVVECERKGELLLMEKQEDVNVNMLFLVNGSPEPALLSPLADNHAERKRKGRSSVSRKSLSLDQFVVPENVFALTEKPICSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSNHKKITGFQFAPGSSSEVLITSADSRIRVVDSIDLVHKFKGFRNASSQISASLTANGKYIVAASEDSHVYIWKNEADCRPNRSKGVTVTQSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSPEQPEHDSSNNDEISSANHPPTPVEENFGVEGSRAASGYHSPHHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFSNGASQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04440 860 MobiDBLite consensus disorder prediction 734 781 - -
Tsu02g04440 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 560 IPR001680 GO:0005515
Tsu02g04440 860 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 526 560 - -
Tsu02g04440 860 SUPERFAMILY WD40 repeat-like 370 695 IPR036322 GO:0005515
Tsu02g04440 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 406 IPR001680 GO:0005515
Tsu02g04440 860 MobiDBLite consensus disorder prediction 28 42 - -
Tsu02g04440 860 MobiDBLite consensus disorder prediction 1 55 - -
Tsu02g04440 860 PANTHER WD REPEAT DOMAIN 44 12 92 IPR040324 -
Tsu02g04440 860 PANTHER WD REPEAT DOMAIN 44 123 860 IPR040324 -
Tsu02g04440 860 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 123 860 - -
Tsu02g04440 860 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 12 92 - -
Tsu02g04440 860 MobiDBLite consensus disorder prediction 1 19 - -
Tsu02g04440 860 Gene3D - 359 719 IPR015943 GO:0005515
Tsu02g04440 860 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Tsu02g04440 860 PRINTS G protein beta WD-40 repeat signature 504 518 IPR020472 -
Tsu02g04440 860 PRINTS G protein beta WD-40 repeat signature 546 560 IPR020472 -
Tsu02g04440 860 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 486 520 - -
Tsu02g04440 860 MobiDBLite consensus disorder prediction 269 293 - -
Tsu02g04440 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 486 526 IPR001680 GO:0005515
Tsu02g04440 860 SMART WD40_4 653 694 IPR001680 GO:0005515
Tsu02g04440 860 SMART WD40_4 562 600 IPR001680 GO:0005515
Tsu02g04440 860 SMART WD40_4 613 652 IPR001680 GO:0005515
Tsu02g04440 860 SMART WD40_4 479 517 IPR001680 GO:0005515
Tsu02g04440 860 SMART WD40_4 520 559 IPR001680 GO:0005515
Tsu02g04440 860 SMART WD40_4 366 405 IPR001680 GO:0005515
Tsu02g04440 860 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 373 406 - -
Tsu02g04440 860 MobiDBLite consensus disorder prediction 311 336 - -
Tsu02g04440 860 Pfam WD domain, G-beta repeat 481 516 IPR001680 GO:0005515
Tsu02g04440 860 Pfam WD domain, G-beta repeat 372 404 IPR001680 GO:0005515
Tsu02g04440 860 Pfam WD domain, G-beta repeat 522 559 IPR001680 GO:0005515
Tsu02g04440 860 Pfam WD domain, G-beta repeat 656 694 IPR001680 GO:0005515
Tsu02g04440 860 MobiDBLite consensus disorder prediction 263 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04440 Tsu-Chr2 53244131 53249944 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04440 K20241 - jre:109013457 1066.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04440 02 53244131 53249944 Tsu02g04440 02 53244131 53249944 ECH