Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04438 ATGGCTGATCGCTTCTTTCCGAACGACTTGCCACCATTCATGGAAGAGACAACACTTGAAGAAGCAACCTCTTCCCAAACACCAATACCACACTCTCTCACCTCACTCCTTTCTCTACCTTACACAACACTCACCTCAAAGCTTCAAGTTTCAGCACTTCACTTGAAACAATCGGTGGTGAATGAGACATGGGGTTCAAGTGGGAACCGTGTGAAGGACTATACCCTTTACACTGGGGTTCTTGGAACAGCATATCTGGTTTTTAAGGCTTACCAAGTAACCAAGAATGTCGATGATCTTAACTTATGCTTGAAGATTGTTAAGGCTTGTGATTCTGCTTCTGAAAATTCAAGCCGTGTGACGTTCATCTGTGGGCGTGCTGGTGTTTGTGCTCTTGGTGCTGTCATAGCTAAGCATGCTGGTGATGAGAGATTACTTGACTATTACGTTAGACAATTCAAAGAgATTGAGCTTCCCTGTGATTTGCCCTACGAGGTATTGTATGGCAGAGCAGGTTACTTATGGGCTTGTTCATTCTTAAACAAGCATATTGGTAAAGACACAATACCTAGTACTCACATGAGACCAATTGTTGATGAAGTTATAACATCGGGTAGAAAATTGGCTCACAAGGGAAGATGTCCTTTGATGTATGAATGGCATGGAAAGAAATATTGGGGCGCTGCTCATGGACTTGCAGGAATCATGAACGTTTTGATGGACATGGAACTTAAGCCAGATGAGGTCGAAGATGTCAAGGGTACACTGCGCTACCTGATTAAAAATCGGTTCTCGAGTGGCAATTATCCCTCCAGTGAAGGAAGTGAATCTGACCGTCTTGTGCATTGGTGTCATGGTGCTCCTGGTGTAACTCTTACGCTTGTAAAAGCAGCTGAGGTTTTTGGGGATAAGGAATTTTTGCAAGCAGCTGAAGAGGCAGGTGAAGTAGTATGGAAGAGGGGTCTTCTTAAGCGAGTTGGAATTTGCCACGGCGTCAGTGGGAACACATATGTCTTTCTTTCTCTGTACAGATTGACAGGAAACAAGGAGTACTTGTACAGGGCTAAAGGATTTTCTTGCTTTCTACTTGATAGAGCGCAAAAATTGATCGCCGAAGGAAAGATGCATGGGGGAGATCGCCCTTATTCGTTATTCGAAGGTCTTGGAGGAATGGCTTATACCTTTCTAGACATGATTGATCCACAAGTTGCAAGGTTTCCTGGCTATGAACTTTGA 1236 0.4377 MADRFFPNDLPPFMEETTLEEATSSQTPIPHSLTSLLSLPYTTLTSKLQVSALHLKQSVVNETWGSSGNRVKDYTLYTGVLGTAYLVFKAYQVTKNVDDLNLCLKIVKACDSASENSSRVTFICGRAGVCALGAVIAKHAGDERLLDYYVRQFKEIELPCDLPYEVLYGRAGYLWACSFLNKHIGKDTIPSTHMRPIVDEVITSGRKLAHKGRCPLMYEWHGKKYWGAAHGLAGIMNVLMDMELKPDEVEDVKGTLRYLIKNRFSSGNYPSSEGSESDRLVHWCHGAPGVTLTLVKAAEVFGDKEFLQAAEEAGEVVWKRGLLKRVGICHGVSGNTYVFLSLYRLTGNKEYLYRAKGFSCFLLDRAQKLIAEGKMHGGDRPYSLFEGLGGMAYTFLDMIDPQVARFPGYEL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04438 411 SUPERFAMILY LanC-like 67 411 - -
Tsu02g04438 411 PRINTS LanC-like protein superfamily signature 73 91 IPR007822 -
Tsu02g04438 411 PRINTS LanC-like protein superfamily signature 164 179 IPR007822 -
Tsu02g04438 411 PRINTS LanC-like protein superfamily signature 225 241 IPR007822 -
Tsu02g04438 411 PRINTS LanC-like protein superfamily signature 280 300 IPR007822 -
Tsu02g04438 411 PRINTS LanC-like protein superfamily signature 326 339 IPR007822 -
Tsu02g04438 411 PRINTS LanC-like protein superfamily signature 381 398 IPR007822 -
Tsu02g04438 411 Pfam Lanthionine synthetase C-like protein 71 411 IPR007822 -
Tsu02g04438 411 Gene3D - 1 411 IPR012341 GO:0005975
Tsu02g04438 411 PANTHER LANC-LIKE PROTEIN 1 411 - -
Tsu02g04438 411 CDD euk_LANCL 76 407 - -
Tsu02g04438 411 PANTHER LANC-LIKE PROTEIN GCL2 1 411 - -
Tsu02g04438 411 PRINTS Eukaryotic LanC-like protein family signature 2 15 IPR020464 -
Tsu02g04438 411 PRINTS Eukaryotic LanC-like protein family signature 214 226 IPR020464 -
Tsu02g04438 411 PRINTS Eukaryotic LanC-like protein family signature 260 275 IPR020464 -
Tsu02g04438 411 PRINTS Eukaryotic LanC-like protein family signature 297 318 IPR020464 -
Tsu02g04438 411 PRINTS Eukaryotic LanC-like protein family signature 342 360 IPR020464 -
Tsu02g04438 411 SMART LANC_like_2 70 411 IPR007822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04438 Tsu-Chr2 53231385 53233894 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04438 - - gmx:100786158 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04438 02 53231385 53233894 Tsu02g04438 02 53231385 53233894 ECH