Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04421 ATGGcgaagaagaaagagagaacCGTTAACGTCTCCGGAAAACCAAAGCACTCCAACGACGCCAACCGTAGCAATGACTCCAAGACCGAGAAACGGTCCGCCGCCACAGTTCGCCGTCTCAAGATGTACAAAAACAGACCCATTCGTGACAGGAAAGGCCATATCCAATCCCACGAGTATCAGAATAAAGATCTTCCTAATACACGAATCAAACCCGATCGTCAATGGTTCGGGAATACTCGTGTTGTGAATCAGAAAGAGCTTGAGTTTTTTAGAGAAGAAATGGCGAAGCATAATTCGAGTACTTTTAATGTTATTCTTAAGGGGAAGAATTTGCCGATGTCGCTTCTCAAGGATTACCAGAAGCAATCTAGGGTTCACCTACTTGATAGAGAGCCTTTTTCGGATGCATTTGGACCTAAGACTAAAAGAAAGAGACCTAGCCTTTTGGCTTCTGATTATGAGTCTTTAGCTAAGAAAGCTGATGGTTCTCAAGATGCTTTTGATGAGAAGTATGCTTCTTTTGGTGCGGCTGCAGAAGCTAGTGAAGCCGATGGATTTAGAGATTTAGTGCGACATACCATGTTTGAAAAGGGTCAAAGCAAACGTATATGGGGTGAACTCTACAAAGTGATAGATTCTTCAGATGTTGTTGTCCAGGTTATAGATGCAAGGGATCCACAAGGCACAAGATGTTACCATTTAGAGAAGCATTTGAAAGAAAATTGCAAGCACAAACACATGGTGCTTTTATTGAACAAGTGTGATCTAATTCCTGCTTGGGCAACAAAAGGATGGCTTAGAGTTTTGTCAAAAGAATATCCAACTTTAGCATTCCATGCAAGCATTAACAAGTCCTTTGGAAAGGGTTCACTTCTATCTGTTCTGAGACAATTTGCAAGATTGAAAAGTGATAAGCAAGCAATATCTGTTGGTTTCGTTGGATATCCAAATGTTGGGAAGTCATCAGTGATCAATACGTTGCGTACTAAGAATGTTTGCAAGGTTGCTCCAATTCCTGGGGAAACAAAAGTCTGGCAATATATAACCCTTACAAAGAGGATCTTTTTGATTGATTGTCCAGGAGTTGTCTATCAGAACAATGACACTGAAACAGATGTTGTGCTCAAGGGTGTGGTGCGTGTAACAAACTTGAAAGATTCTGCTGACCATATTGGTGAGGTTTTGAAACGTGTGAAGAAGGAGCACTTGATAAgagcttataaaataaaagactgGGTTGATGAAAATGACTTCCTACTTCAGCTTTGCAAATCATCTGGCAAACTCCTTAAGGGTGGTGAACCTGACCTTACGACTGCAGCAAAGATGATACTTCATGACTGGCAGAGGGGTAAAATTCCCTTTTTTGTGCCTCCTCCACGGCAGGATGCCTTGTCCGAGTCCGAGGAGCCTAATGTTAATGGCATAGAAGTTGACGAGACAGTTGATCCCAACCAGGCATCTGCTGCCATTAAAGCTATTGCAAATGTTCTTTCATCCCAGCAGCAAAGAAATGTACCAGTTCAAGGGGATCTATATAATGAGAATGAGTTGAAGGGAGAATCTACCGACCAAATTCTAAACACTGGGGATTACACAGATGAAGAAGATAGTGACGCATCTGAGCAGGATCCATCTGAGCAGGACCCATCTACTGATGTTCCATCTGAGCAACTTACTTCTGCCGAGCCGGTCCCAACAAGTGAATCGTGA 1716 0.4155 MAKKKERTVNVSGKPKHSNDANRSNDSKTEKRSAATVRRLKMYKNRPIRDRKGHIQSHEYQNKDLPNTRIKPDRQWFGNTRVVNQKELEFFREEMAKHNSSTFNVILKGKNLPMSLLKDYQKQSRVHLLDREPFSDAFGPKTKRKRPSLLASDYESLAKKADGSQDAFDEKYASFGAAAEASEADGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVIDARDPQGTRCYHLEKHLKENCKHKHMVLLLNKCDLIPAWATKGWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNNDTETDVVLKGVVRVTNLKDSADHIGEVLKRVKKEHLIRAYKIKDWVDENDFLLQLCKSSGKLLKGGEPDLTTAAKMILHDWQRGKIPFFVPPPRQDALSESEEPNVNGIEVDETVDPNQASAAIKAIANVLSSQQQRNVPVQGDLYNENELKGESTDQILNTGDYTDEEDSDASEQDPSEQDPSTDVPSEQLTSAEPVPTSES 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04421 571 CDD NGP_1 207 363 - -
Tsu02g04421 571 PANTHER GTP-BINDING PROTEIN-RELATED 7 554 - -
Tsu02g04421 571 MobiDBLite consensus disorder prediction 512 571 - -
Tsu02g04421 571 Gene3D - 366 458 IPR023179 -
Tsu02g04421 571 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 205 366 IPR030378 GO:0005525
Tsu02g04421 571 MobiDBLite consensus disorder prediction 1 37 - -
Tsu02g04421 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 438 IPR027417 -
Tsu02g04421 571 MobiDBLite consensus disorder prediction 548 571 - -
Tsu02g04421 571 Gene3D - 195 365 IPR027417 -
Tsu02g04421 571 Pfam NGP1NT (NUC091) domain 42 166 IPR012971 -
Tsu02g04421 571 PRINTS GTP1/OBG GTP-binding protein family signature 311 331 IPR006073 GO:0005525
Tsu02g04421 571 PRINTS GTP1/OBG GTP-binding protein family signature 357 372 IPR006073 GO:0005525
Tsu02g04421 571 Pfam 50S ribosome-binding GTPase 311 399 IPR006073 GO:0005525
Tsu02g04421 571 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 2 7 554 IPR024929 GO:0005730
Tsu02g04421 571 MobiDBLite consensus disorder prediction 531 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04421 Tsu-Chr2 53034211 53040018 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04421 K14537 - gmx:100781028 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04421 02 53034211 53040018 Tsu02g04421 02 53034211 53040018 ECH