Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04399 ATGGATCCTGAAGTTGTTGAAGTTCCTCCTCAAATTCACCAAAAACCTTCCAAATTCAAAAAGCGGAAACAACAGACCGCTTTCGATATTGACCTTGAAGGTGATGACGATTTATTGGTACTTGGTGAAACTTCTCgtaaaagtaaaagaaataagGGGAAGGCAGTGGTTTCCTCGGGTTTGACGACAATCACAGATGAACCCGAAAATGAAACTTTGAAGAAACTTCGAAGTTTTAAGCAATTTGACATTATCGATGACACTTCCGACCATCactatgttaaaaaaaaatcctccaTGAAGCAAAATCCAACCAGATGGGCTAAAAAAATCCAGAATGAGTGGAAGATTTTGGAGAAGCATTTGCCGGATACAATATTTGTGAGAGTCTTCGAATCAAGGATGGATCTCTTGAGGGCTGTGATTATTGGAGCAGAAGGGACTCCTTACCAGGACGGTCTTTTCTTTTTCGATGTTTTATTTCCCAGTGGCTATCCTAATGTACCCCCGAAAGTCCGCTATCGTGCTGGTGGTCTTCGTGTCAACCCGAATTTGTATGCAAATGGCAAAGTATGTCTCAGTCTACTTAACACCTGGTCTGGCCGCAAGAAAGAGAAATGGACTCCAGGTGTTTCAACAATGCTACAGGTTCTAGTCTCTATACAAGGTCTAATCTTGAACGCAAAGCCTTACTTTAATGAACCTGCATATGCAAGATCGAGTGGCACAAAACATGGTGAAGCGCAGTCCCTGAAGTATAATGAGAATACATTCATTCTATCAGTGAGGACAATGATGTATATGATGAAAAAGCCGCCAAAGAATTTTGAAGACCTTGTTGTGGGGCATTTCTACAGCCGAGCAAATGATATTCTGGCGTCATGTAAAGCATACATGGAAGGTGTTCAAGTTGGTTGCTTGGTGAAAGGTGGTGTTCAAGATGTTGATGAGGATGGAGGAAAAAGCTCAAATAAATTTAAGGCTGATTTACTTGGATGTGTCAAGCTTCTTGTTGAACAGTTTGAAAAAATTGGAGTTAAGGACTGCCAGAAATTCATGTCTCCGACTCCTCCAGAACCGACTCCTTTGAAACCATCTACTCCGAAACCGACTCTTAAACTGACTACTCCGAAACCGACTCCTTCAAAACCGCATACCTCTGGCGGCAGAAATTGA 1176 0.4073 MDPEVVEVPPQIHQKPSKFKKRKQQTAFDIDLEGDDDLLVLGETSRKSKRNKGKAVVSSGLTTITDEPENETLKKLRSFKQFDIIDDTSDHHYVKKKSSMKQNPTRWAKKIQNEWKILEKHLPDTIFVRVFESRMDLLRAVIIGAEGTPYQDGLFFFDVLFPSGYPNVPPKVRYRAGGLRVNPNLYANGKVCLSLLNTWSGRKKEKWTPGVSTMLQVLVSIQGLILNAKPYFNEPAYARSSGTKHGEAQSLKYNENTFILSVRTMMYMMKKPPKNFEDLVVGHFYSRANDILASCKAYMEGVQVGCLVKGGVQDVDEDGGKSSNKFKADLLGCVKLLVEQFEKIGVKDCQKFMSPTPPEPTPLKPSTPKPTLKLTTPKPTPSKPHTSGGRN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04399 391 MobiDBLite consensus disorder prediction 1 24 - -
Tsu02g04399 391 MobiDBLite consensus disorder prediction 355 377 - -
Tsu02g04399 391 Gene3D Ubiquitin Conjugating Enzyme 65 348 IPR016135 -
Tsu02g04399 391 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 106 266 IPR000608 -
Tsu02g04399 391 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 29 355 - -
Tsu02g04399 391 MobiDBLite consensus disorder prediction 352 391 - -
Tsu02g04399 391 SMART ubc_7 109 266 - -
Tsu02g04399 391 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 29 355 - -
Tsu02g04399 391 CDD UBCc 109 236 IPR000608 -
Tsu02g04399 391 Pfam Ubiquitin-conjugating enzyme 111 237 IPR000608 -
Tsu02g04399 391 SUPERFAMILY UBC-like 91 273 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g04399 Tsu-Chr2 52773429 52776311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g04399 29 355 Miscellaneous Gene Families AT2G33770 44.868 1.79e-90 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04399 K10581 - ccaj:109805727 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04399 02 52773429 52776311 Tsu02g04399 02 52773429 52776311 ECH