Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g04385 ATGAATCACCCTTCAGCCATGGCTACTGCTACCACTAGCTTTGGAACTGCGTGGTCTCTAAGAAGAGCAATAACTCATGCTTTTGCACTTTCTCATTCTCATAATCTCCGCACAAATGCCAACCTCACTTTTCAAAGAACCCTTACCTCTCATCTTCTCTCCGTTTCCACTTCTTCAGATTCAGGTGCAAGCAAGGCAGTACAAGCTTCAAAAGGAGAAGTTGATGTGTTGCTCAAAGGAGTTGGGGAGAAAAGTGTAGCAAATGAAGTGAAGCATGTTCTTGAGATGGCTAGACGAGCATCATTAAAACGAGAGATTCTCCATACAAATTTTCTAACCCCTCCAGTGGTGAAGGAATCTATGCAAATATTGGAAAAATTAGCAGACGTTAAAGCATTGGCTCAAGGAGGTTATCCACAGGCTGAACGGTGCCGGATTTCTGTTGGACATCCAGACGTACTGACAAGTGATCCAGACGTTATTTCGGCATTgagCCTTACAGGGAACTTCCAGTTTGAACCTTGCTCTCATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTGCCAGGGAGAAAGTTGGAGATATTATATTGCAGGGAGAACAGGGTGCTCAGATAATTGTTGTACCAGAACTTGTTGAATTTCTTACGTTGACACTGGATAAGGTTCGTAATGTTCCTGTAACTTGCACCAAGATACCATTAATTTCTCTTGATTATGAACCGCCAAGaacaaaatcattcaaaaccATAGAAGCATCACTAAGAGTTGATGCAGTAGCTAGTGCAGGATTTAAGATTTCTCGTTCAAAGCTAGTTGACATGATCAGCAATGGCGATGTACGTATCAACTGGATCCGGATTACTAGCAAAGGAACCACAATCAAGAGTGGAGATCTTGTATCAGTTAGTGGATTGGGAAGATTAAAGATTGGAGAAGTAAACACCACAAAGAAAGGAAAGTTTGCCGTGGAGCTCATTCGATTTTTGTAG 996 0.4137 MNHPSAMATATTSFGTAWSLRRAITHAFALSHSHNLRTNANLTFQRTLTSHLLSVSTSSDSGASKAVQASKGEVDVLLKGVGEKSVANEVKHVLEMARRASLKREILHTNFLTPPVVKESMQILEKLADVKALAQGGYPQAERCRISVGHPDVLTSDPDVISALSLTGNFQFEPCSHGDFLGSILGTGIAREKVGDIILQGEQGAQIIVVPELVEFLTLTLDKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASLRVDAVASAGFKISRSKLVDMISNGDVRINWIRITSKGTTIKSGDLVSVSGLGRLKIGEVNTTKKGKFAVELIRFL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g04385 331 Gene3D - 158 239 IPR012677 -
Tsu02g04385 331 SMART s4_6 256 318 IPR002942 GO:0003723
Tsu02g04385 331 Pfam Putative RNA-binding domain in YlmH 164 236 IPR040591 -
Tsu02g04385 331 Gene3D - 250 306 IPR036986 GO:0003723
Tsu02g04385 331 Gene3D - 83 150 - -
Tsu02g04385 331 Pfam S4 domain 257 302 IPR002942 GO:0003723
Tsu02g04385 331 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 66 331 - -
Tsu02g04385 331 CDD S4 257 306 - -
Tsu02g04385 331 TIGRFAM PS_II_S4: photosystem II S4 domain protein 86 329 IPR017506 -
Tsu02g04385 331 SUPERFAMILY Alpha-L RNA-binding motif 115 318 - -
Tsu02g04385 331 ProSiteProfiles S4 RNA-binding domain profile. 256 322 - -
Tsu02g04385 331 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 66 331 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g04385 - - gmx:100793767 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04385 02 52542306 52547825 Tsu02g04385 02 52542306 52547825 ECH